View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19019_high_3 (Length: 464)
Name: NF19019_high_3
Description: NF19019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19019_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 154; Significance: 2e-81; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 14 - 171
Target Start/End: Original strand, 43428240 - 43428397
Alignment:
| Q |
14 |
caagaagaagacctaacctaacattcctacacccttgagacccaaaacaagactaaggacacaaaacctacttcggaagataacacatgctccaaaccta |
113 |
Q |
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| T |
43428240 |
caagaagaagacctaacctaactttcctacacccttgagacccaaaacaagactaaggacacaaaacctacttcggaagataacacatgctccaaaccta |
43428339 |
T |
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| Q |
114 |
actatttgaaaactacacccgactactatctggacacataatatttaatggagttatc |
171 |
Q |
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| T |
43428340 |
actatttgaaaactacacccgactactatctggacacataatatttaatggagttatc |
43428397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 350 - 407
Target Start/End: Original strand, 43428575 - 43428632
Alignment:
| Q |
350 |
ataattttaatctccatcttcaactaaatcatatatcattattggtttaagttgaccc |
407 |
Q |
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| T |
43428575 |
ataattttaatctccaccttcaactaaatcatatatcattattggtttaagttgaccc |
43428632 |
T |
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