View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19019_low_1 (Length: 679)
Name: NF19019_low_1
Description: NF19019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19019_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 376; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 14 - 430
Target Start/End: Complemental strand, 14459368 - 14458947
Alignment:
| Q |
14 |
aggtgaagtacaatttttctactatgcaaaattctacaagtcagagaatcatataaggtggcatgcatataagaaagcaataaaagataatgaaggtaag |
113 |
Q |
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| T |
14459368 |
aggtgaagtacaatttttctactatgcaaaattctacaagtcagagaatcatataaggtggcatgcatataagaaagcaataaaagataatgaaggtaag |
14459269 |
T |
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| Q |
114 |
ggaaaacttatgtcagaaccaacacatcatcaacaaattttgcgtcatttactcaacaatgagtccgaggaatggtgcaataaaatattcgaggtattta |
213 |
Q |
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| T |
14459268 |
ggaaaacttatgtcagaaccaacacatcatcaacaaattttgcgtcatttactcaacaatgagtccgaggaatggtgcaataaaatattcgaggtaatta |
14459169 |
T |
|
| Q |
214 |
ctgcattgaattattcctaagtttatatatcctatttcatttcatcattacataaaatcataaacagtactaacacatcactcatagatgaatttgaatc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14459168 |
ctgcattgaattattcctaagtttatatatcctatttcatttcatcattacataaaatcataaacagtactaacacatcactcatagatgaatttgaatc |
14459069 |
T |
|
| Q |
314 |
ctctcccctgctacaatagtgtgac-ata-ttttcatgtaaaaaagtgttatca---cacatcaatattatgttctggttaaacacaatattgttgcatt |
408 |
Q |
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| T |
14459068 |
ctctcccctgctacaatagtgtgacaatatttttcatgtgaaaaagtgttatcacttcacatcaatattatgttctggttaaacaaaatattgttgcata |
14458969 |
T |
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| Q |
409 |
gttgcatgcagaggatccaaat |
430 |
Q |
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| T |
14458968 |
gttgcatgcagaggatccaaat |
14458947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 437 - 664
Target Start/End: Complemental strand, 14467837 - 14467611
Alignment:
| Q |
437 |
ctacagactctactgtcatttctccaacattatagattgaatccactgtgaaatacatattcacatgtgtcaaaattgaacctgttaccaaacgggaaac |
536 |
Q |
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| T |
14467837 |
ctacagactctacttttattgctccaacattatagattgaatcaactgtgaaata-atattcacatatgtcaagttccaacctgttaccaaacgggaaac |
14467739 |
T |
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| Q |
537 |
ttgtaccatatagagatcaaaatcttcttttctagtattttggcttagatttattgttgtaatgaatgttcacttacacttgtgttatttgctaaaatta |
636 |
Q |
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||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
14467738 |
ttggaccatatagagatcaaaatcttcttttctagtagtttggcttagatttattgttgtagtgaatgttcacttacaactgtgttatttgctaaaatta |
14467639 |
T |
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| Q |
637 |
aattcaatcacattggaatttgtaggtg |
664 |
Q |
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| T |
14467638 |
aattcaatcacattggaatttgtaggtg |
14467611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 305 - 407
Target Start/End: Complemental strand, 14468059 - 14467954
Alignment:
| Q |
305 |
atttgaatcctctcccctgctacaatagtgtgaca---tattttcatgtaaaaaagtgttatcacacatcaatattatgttctggttaaacacaatattg |
401 |
Q |
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|||||||||||||||| || | ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
14468059 |
atttgaatcctctcccatggtgcaacagtgtgacaaaatattttcatgtaaaaaagtgttatcacacatcaatattatgttctggttaaacaaaatattg |
14467960 |
T |
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| Q |
402 |
ttgcat |
407 |
Q |
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|||||| |
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| T |
14467959 |
ttgcat |
14467954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 587 - 664
Target Start/End: Complemental strand, 14458805 - 14458728
Alignment:
| Q |
587 |
ttattgttgtaatgaatgttcacttacacttgtgttatttgctaaaattaaattcaatcacattggaatttgtaggtg |
664 |
Q |
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| T |
14458805 |
ttattgttgtaatgaatgttcacttacaattgtgttatttgctaaaactaaattcaatcacattggaatttgtaggtg |
14458728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 563 - 603
Target Start/End: Complemental strand, 14458866 - 14458826
Alignment:
| Q |
563 |
cttttctagtattttggcttagatttattgttgtaatgaat |
603 |
Q |
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| T |
14458866 |
cttttctagtatgttggcttagatttattgttgtaatgaat |
14458826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 574 - 664
Target Start/End: Complemental strand, 12069492 - 12069402
Alignment:
| Q |
574 |
ttttggcttagatttattgttgtaatgaatgttcacttacacttgtgttatttgctaaaattaaattcaatcacattggaatttgtaggtg |
664 |
Q |
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| T |
12069492 |
ttttggcttagatttattgttgtaatgaatattcactttcacttgtgttttttgctaaaattaaattcaatcgcattggaatttgtaggtg |
12069402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 630 - 664
Target Start/End: Complemental strand, 12069536 - 12069502
Alignment:
| Q |
630 |
aaaattaaattcaatcacattggaatttgtaggtg |
664 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
12069536 |
aaaattaaattcaatcacattggaatttgtaggtg |
12069502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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