View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19019_low_11 (Length: 248)

Name: NF19019_low_11
Description: NF19019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19019_low_11
NF19019_low_11
[»] scaffold0024 (3 HSPs)
scaffold0024 (6-248)||(114426-114668)
scaffold0024 (54-212)||(121245-121399)
scaffold0024 (14-52)||(121217-121255)
[»] chr6 (3 HSPs)
chr6 (164-208)||(10890406-10890450)
chr6 (161-208)||(29246413-29246460)
chr6 (178-208)||(7712316-7712346)
[»] chr1 (5 HSPs)
chr1 (164-208)||(32581076-32581120)
chr1 (161-206)||(19808813-19808858)
chr1 (174-226)||(28820873-28820926)
chr1 (169-198)||(30066510-30066539)
chr1 (176-208)||(19809049-19809081)
[»] chr4 (3 HSPs)
chr4 (161-208)||(6986692-6986739)
chr4 (169-208)||(40829676-40829715)
chr4 (169-205)||(5079208-5079244)
[»] chr3 (2 HSPs)
chr3 (169-208)||(21143746-21143785)
chr3 (169-205)||(46560742-46560778)
[»] chr2 (2 HSPs)
chr2 (169-208)||(29929990-29930029)
chr2 (170-203)||(42467844-42467877)
[»] chr5 (2 HSPs)
chr5 (170-204)||(28478134-28478168)
chr5 (164-212)||(21048160-21048208)
[»] chr8 (1 HSPs)
chr8 (172-212)||(17595139-17595179)


Alignment Details
Target: scaffold0024 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 6 - 248
Target Start/End: Original strand, 114426 - 114668
Alignment:
Q  6 ccaagaatatggtcaatctgaatcaaatcatgaacttgagtctcttgatgagtatcttggcaagctaaataatggtaaagtgtaattactttttggtatc 105  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  114426 ccaagaaaatggtcaatctgaatcaaatcatgaacttgagtctcttgatgagtatcttggcaagctaaataatggtaaagtgtaattactttttggtatc 114525  T
Q  106 atagtttcttctcattttagtcctgcaaatgacgcttaaaatcgcggataaagatttatgtttagtggatggttaatgagttgtgacaccttgttatatt 205  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  114526 gtagtttcttctcattttagtcctgcaaatgacgcttaaaatcgcggataaaaagttatgtttagtggatggttaatgagttgtgacaccttgttatatt 114625  T
Q  206 catcaacatttaccaaacgtatcaaaattgttgttgaaattcg 248  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  114626 catcaacatttaccgaacgtatcaaaattgttgttgaaattcg 114668  T

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Target: scaffold0024; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 54 - 212
Target Start/End: Original strand, 121245 - 121399
Alignment:
Q  54 tgagtatcttggcaagctaaataatggtaaagtgtaattactttttggtatcatagtttcttctcattttagtcctgcaaatgacgcttaaaatcgcgga 153  Q
    ||||| ||||||||| ||||||||||||||||||||||||| ||||||| |  ||||||||||||||||||||||| ||||||||||||||||| | |||    
T  121245 tgagtctcttggcaaactaaataatggtaaagtgtaattaccttttggtgttgtagtttcttctcattttagtcctacaaatgacgcttaaaattgtgga 121344  T
Q  154 taaagatttatgtttagtggatggttaatgagttgtgacaccttgttatattcatcaac 212  Q
    |    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  121345 t----atttacgtttagtggatggttaatgagttgtgacaccttgttatattcatcaac 121399  T

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Target: scaffold0024; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 121217 - 121255
Alignment:
Q  14 atggtcaatctgaatcaaatcatgaacttgagtctcttg 52  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  121217 atggtcaatctgaatcaaaacatgaacttgagtctcttg 121255  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 10890406 - 10890450
Alignment:
Q  164 tgtttagtggatggttaatgagttgtgacaccttgttatattcat 208  Q
    |||| |||||||||||||||||| |||||||||||||||||||||    
T  10890406 tgttcagtggatggttaatgagtcgtgacaccttgttatattcat 10890450  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 208
Target Start/End: Original strand, 29246413 - 29246460
Alignment:
Q  161 ttatgtttagtggatggttaatgagttgtgacaccttgttatattcat 208  Q
    ||||||| |||| ||||||||||||||| |||||||||||||||||||    
T  29246413 ttatgttcagtgtatggttaatgagttgcgacaccttgttatattcat 29246460  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 208
Target Start/End: Original strand, 7712316 - 7712346
Alignment:
Q  178 ttaatgagttgtgacaccttgttatattcat 208  Q
    |||||||||||||||||||||||||||||||    
T  7712316 ttaatgagttgtgacaccttgttatattcat 7712346  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 32581120 - 32581076
Alignment:
Q  164 tgtttagtggatggttaatgagttgtgacaccttgttatattcat 208  Q
    |||||||||||| |||||||||||| |||| ||||||||||||||    
T  32581120 tgtttagtggattgttaatgagttgcgacagcttgttatattcat 32581076  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 19808858 - 19808813
Alignment:
Q  161 ttatgtttagtggatggttaatgagttgtgacaccttgttatattc 206  Q
    ||||||| | |||||| ||| |||||||||||||||||||||||||    
T  19808858 ttatgttcaatggatgattactgagttgtgacaccttgttatattc 19808813  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 28820926 - 28820873
Alignment:
Q  174 atggttaatgagttgtgacaccttgttatattcatcaa-catttaccaaacgta 226  Q
    |||||||||||||||||| |  ||||||||||||| || |||||||||||||||    
T  28820926 atggttaatgagttgtgatattttgttatattcattaatcatttaccaaacgta 28820873  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 198
Target Start/End: Complemental strand, 30066539 - 30066510
Alignment:
Q  169 agtggatggttaatgagttgtgacaccttg 198  Q
    ||||||||||||||||||||||||||||||    
T  30066539 agtggatggttaatgagttgtgacaccttg 30066510  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 19809049 - 19809081
Alignment:
Q  176 ggttaatgagttgtgacaccttgttatattcat 208  Q
    |||||||||||||| ||||||||||||||||||    
T  19809049 ggttaatgagttgtaacaccttgttatattcat 19809081  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 208
Target Start/End: Original strand, 6986692 - 6986739
Alignment:
Q  161 ttatgtttagtggatggttaatgagttgtgacaccttgttatattcat 208  Q
    ||||||||| ||||||||||||||||||  ||||||||| ||||||||    
T  6986692 ttatgtttaatggatggttaatgagttgcaacaccttgtcatattcat 6986739  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 208
Target Start/End: Original strand, 40829676 - 40829715
Alignment:
Q  169 agtggatggttaatgagttgtgacaccttgttatattcat 208  Q
    ||||||||||||||||||||  ||||||||||||||||||    
T  40829676 agtggatggttaatgagttgctacaccttgttatattcat 40829715  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 205
Target Start/End: Original strand, 5079208 - 5079244
Alignment:
Q  169 agtggatggttaatgagttgtgacaccttgttatatt 205  Q
    |||| |||||||||||||||||| |||||||||||||    
T  5079208 agtgaatggttaatgagttgtgataccttgttatatt 5079244  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 208
Target Start/End: Complemental strand, 21143785 - 21143746
Alignment:
Q  169 agtggatggttaatgagttgtgacaccttgttatattcat 208  Q
    |||||||| ||||||||||||||||| |||||||||||||    
T  21143785 agtggatgattaatgagttgtgacactttgttatattcat 21143746  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 205
Target Start/End: Original strand, 46560742 - 46560778
Alignment:
Q  169 agtggatggttaatgagttgtgacaccttgttatatt 205  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  46560742 agtgaatgattaatgagttgtgacaccttgttatatt 46560778  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 208
Target Start/End: Original strand, 29929990 - 29930029
Alignment:
Q  169 agtggatggttaatgagttgtgacaccttgttatattcat 208  Q
    |||||||||||||||| || ||||||||||||||||||||    
T  29929990 agtggatggttaatgaattttgacaccttgttatattcat 29930029  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 203
Target Start/End: Original strand, 42467844 - 42467877
Alignment:
Q  170 gtggatggttaatgagttgtgacaccttgttata 203  Q
    ||||| ||||||||||||||||||||||||||||    
T  42467844 gtggacggttaatgagttgtgacaccttgttata 42467877  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 204
Target Start/End: Complemental strand, 28478168 - 28478134
Alignment:
Q  170 gtggatggttaatgagttgtgacaccttgttatat 204  Q
    ||||||||||||||| |||||||||||||||||||    
T  28478168 gtggatggttaatgaattgtgacaccttgttatat 28478134  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 21048208 - 21048160
Alignment:
Q  164 tgtttagtggatggttaatgagttgtgacaccttgttatattcatcaac 212  Q
    ||||||||||||| ||||||||| |||| ||| ||||||| ||||||||    
T  21048208 tgtttagtggatgattaatgagtcgtgaaaccatgttatagtcatcaac 21048160  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 17595139 - 17595179
Alignment:
Q  172 ggatggttaatgagttgtgacaccttgttatattcatcaac 212  Q
    ||||| ||||||||||| |||||||||||||||||| ||||    
T  17595139 ggatgattaatgagttgagacaccttgttatattcaccaac 17595179  T

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