View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19019_low_2 (Length: 612)
Name: NF19019_low_2
Description: NF19019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19019_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 566; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 15 - 611
Target Start/End: Complemental strand, 42471913 - 42471316
Alignment:
| Q |
15 |
gtgaagagcacgccaccaacagttacgcgtgttcatggattgataaactgtttgttgatactaactagtccatcaagtgtct-taaaggtgatcatgact |
113 |
Q |
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| T |
42471913 |
gtgaagagcacgccaccaacagttacgcgtgttcatggattgataaactgtttgttgatactaactagtccatcaagtgtgtcttaaggtgatcatgact |
42471814 |
T |
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| Q |
114 |
actcaaataactggctcaaatttatttacaatgttaatgtaacgtatatttgtcgtaaatgagtagcttattacatacctgcagttgatcacctatgtta |
213 |
Q |
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|| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42471813 |
acgcaaataactggctcaaatttagttacaatgttaatgtagcgtatatttgtcgtaaatgagtagcttattacatacctgcagttgatcacctatgtta |
42471714 |
T |
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| Q |
214 |
ataacaaaggcatcaggaattgggttaatagcaagccacttgccatctttgaggacttgtaggccagcaacatgaagatcttggagtagaattgtaagtg |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42471713 |
ataacaaaggcatcaggaattgggttaatagcaagccacttgccatctttgaggacttgtaggccagcaacatgaagatcttggagtagaattgtaagtg |
42471614 |
T |
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| Q |
314 |
catttgggtctgtatgccctggcaatccataagtaagttctggttgtgggcatggtggatagtaattcactgccatgtgctgcccttgttcacctaaagc |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42471613 |
catttgggtctgtatgccctggcaatccataagtaagttctggttgtgggcatggtggatagtaattcactgccatgtgctgcccttgttcacctaaagc |
42471514 |
T |
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| Q |
414 |
attccttaagtaatctttttctaggcccaagctctctgatatgtattcttctattctcaaccccaattccctaacttctttgcagtaatttgccacagtt |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42471513 |
attccttaagtaatctttttctaggcccaagctctctgatatgtattcttctattctcaaccccaattccctaacttctttgcagtaatttgccacagtt |
42471414 |
T |
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| Q |
514 |
tccctgccacatacaaattatcatgcaacagttgtcaattatgttggaccttaatttgcttgttaattcatcatctaccgaaacacaaattattgatg |
611 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42471413 |
tccctgccacatacaaattatcatgcaacagttgtcaattatgttggactttaatttgcttgttaattcatcatctaccgaaacacaaattattgatg |
42471316 |
T |
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