View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19019_low_4 (Length: 397)

Name: NF19019_low_4
Description: NF19019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19019_low_4
NF19019_low_4
[»] chr8 (5 HSPs)
chr8 (15-161)||(22942695-22942841)
chr8 (156-308)||(22942472-22942623)
chr8 (342-381)||(22942403-22942442)
chr8 (206-253)||(8556659-8556706)
chr8 (206-259)||(10368808-10368861)
[»] chr2 (3 HSPs)
chr2 (206-259)||(8227316-8227369)
chr2 (218-259)||(21089326-21089367)
chr2 (226-274)||(17347346-17347394)
[»] chr7 (1 HSPs)
chr7 (226-258)||(40819092-40819124)
[»] chr3 (2 HSPs)
chr3 (207-256)||(35699977-35700026)
chr3 (206-255)||(49812159-49812208)
[»] chr4 (1 HSPs)
chr4 (206-258)||(48979483-48979535)


Alignment Details
Target: chr8 (Bit Score: 135; Significance: 3e-70; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 15 - 161
Target Start/End: Complemental strand, 22942841 - 22942695
Alignment:
Q  15 aaggtttttgacgtctgtataacagcaacgcaatctcaagtaaacttgtatcgaacgaatttgacatcgattatccttaatattatgattcatgatgcaa 114  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22942841 aaggtttttgacgtctctataacagcaacgcaatctcaagtaaacttgtatcgaacgaatttgacatcgattatccttaatattatgattcatgatgcaa 22942742  T
Q  115 tttgcaaccttgaatcatgttatacatatttcatcacaaaccttata 161  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||    
T  22942741 tttgcaaccttgattcatgttatacgtatttcatcacaaaccttata 22942695  T

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Target: chr8; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 156 - 308
Target Start/End: Complemental strand, 22942623 - 22942472
Alignment:
Q  156 cttataggacgctattgattcagcagccataaatattaaagagttgattctgttaagagtcacacatttgatgagatatgacatgaacatgtatttataa 255  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  22942623 cttataggacactattgattcagctgccataaatattaaagagttgattctgttaagagtcacacatttgatgagatatgacatgaagatgtatttataa 22942524  T
Q  256 gtggatacatttctcatctcagaatgtgtgactctttaagggttacatcaagt 308  Q
    |||||||||||||||||||||||||||| |||| |||||| | ||||||||||    
T  22942523 gtggatacatttctcatctcagaatgtgcgact-tttaagaggtacatcaagt 22942472  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 342 - 381
Target Start/End: Complemental strand, 22942442 - 22942403
Alignment:
Q  342 agttagttacatctctaataacaaaggaaggtatgaaaag 381  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  22942442 agttagttacatctctaataataaaggaaggtatgaaaag 22942403  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 206 - 253
Target Start/End: Complemental strand, 8556706 - 8556659
Alignment:
Q  206 tgttaagagtcacacatttgatgagatatgacatgaacatgtatttat 253  Q
    ||||||||||  |||||||||||||||| |||||||| ||||||||||    
T  8556706 tgttaagagtttcacatttgatgagataagacatgaaaatgtatttat 8556659  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 10368808 - 10368861
Alignment:
Q  206 tgttaagagtcacacatttgatgagatatgacatgaacatgtatttataagtgg 259  Q
    ||||||||||| |||||| |||||||||| |  |||| ||||||||||||||||    
T  10368808 tgttaagagtcccacattggatgagatataatttgaaaatgtatttataagtgg 10368861  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 8227316 - 8227369
Alignment:
Q  206 tgttaagagtcacacatttgatgagatatgacatgaacatgtatttataagtgg 259  Q
    |||||||||||||||||| ||||||| ||| |||||||| || |||||||||||    
T  8227316 tgttaagagtcacacattggatgagagatggcatgaacaagtgtttataagtgg 8227369  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 218 - 259
Target Start/End: Original strand, 21089326 - 21089367
Alignment:
Q  218 cacatttgatgagatatgacatgaacatgtatttataagtgg 259  Q
    |||||| |||||||||||||||||| ||||||||||||||||    
T  21089326 cacattggatgagatatgacatgaaaatgtatttataagtgg 21089367  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 17347394 - 17347346
Alignment:
Q  226 atgagatatgacatgaacatgtatttataagtggatacatttctcatct 274  Q
    |||||||||||||||| ||||| |||||||||||| ||| || ||||||    
T  17347394 atgagatatgacatgatcatgtgtttataagtggaaacagttatcatct 17347346  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 40819092 - 40819124
Alignment:
Q  226 atgagatatgacatgaacatgtatttataagtg 258  Q
    |||||||||||||||||||||||||||||||||    
T  40819092 atgagatatgacatgaacatgtatttataagtg 40819124  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 256
Target Start/End: Complemental strand, 35700026 - 35699977
Alignment:
Q  207 gttaagagtcacacatttgatgagatatgacatgaacatgtatttataag 256  Q
    |||||||||| |||||||||||||||||| |||||  |||| ||||||||    
T  35700026 gttaagagtctcacatttgatgagatatggcatgacaatgtgtttataag 35699977  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 49812159 - 49812208
Alignment:
Q  206 tgttaagagtcacacatttgatgagatatgacatgaacatgtatttataa 255  Q
    ||||||||||| ||| || |||||||||||| |||||||||| |||||||    
T  49812159 tgttaagagtctcacgttggatgagatatgatatgaacatgtgtttataa 49812208  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 258
Target Start/End: Complemental strand, 48979535 - 48979483
Alignment:
Q  206 tgttaagagtcacacatttgatgagatatgacatgaacatgtatttataagtg 258  Q
    ||||||||||| |||||| ||||||||| | ||||||||||  ||||||||||    
T  48979535 tgttaagagtcccacattagatgagataaggcatgaacatgagtttataagtg 48979483  T

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