View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19019_low_5 (Length: 390)
Name: NF19019_low_5
Description: NF19019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19019_low_5 |
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| [»] scaffold0025 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 42 - 389
Target Start/End: Complemental strand, 21075581 - 21075249
Alignment:
| Q |
42 |
gaattaaacatccaaaataaatgtcacgatctttcgagctaacagcccaaagtgaaaatttatccaagacaacggagcaaaatcggataattgcagaacc |
141 |
Q |
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| T |
21075581 |
gaattaaacatccaaaataaaggccacgatctttcgagcta---gtccaaagtgaaaatttatccaagacaacgaagcataatcgggtaattatataacc |
21075485 |
T |
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| Q |
142 |
aaaccaacagaacatcaaaacaagacggaccgtgaatggccctatatcacatccccttctaaaaaccagctctgacgcgaaccacaagggaaacacattt |
241 |
Q |
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| T |
21075484 |
aaaccaacagaacaccaaaacatgacggaccgtgaatggccctct-----atccccttctcaaaaccagctctgacgcgaaccacaacggaaacacattt |
21075390 |
T |
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| Q |
242 |
ttgaatcacataatagcgacgtgccgacgtcgaatctgttaaaacaaaattgtttgtaagacacccaaacgaaactgacaacgtagatgcaacgcaccca |
341 |
Q |
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|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
21075389 |
ttgaatcacataatagtgacgtgccaacgtcgaatctgttaaaacaaaattgtttgtaagacacccaaacgaaactgacaacatagatgcaacgc----- |
21075295 |
T |
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| Q |
342 |
cgccgtttttacactctatgccagaagcagcacagagaggagaacaca |
389 |
Q |
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| T |
21075294 |
--ccgtttttacactctatgccagaagcagcacagagaggagaacaca |
21075249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 18 - 258
Target Start/End: Complemental strand, 21021800 - 21021560
Alignment:
| Q |
18 |
aacagtaagtctcaaccaccacttgaattaaacatccaaaataaatgtcacgatctttcgagctaacagcccaaagtgaaaatttatccaagacaacgga |
117 |
Q |
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| T |
21021800 |
aacagtaagtctcaacgaccacctgaattaaacatccaaaataaagtccacgatctttcaagctaacaatccaaagtgaaaatttgtccaagacaacgaa |
21021701 |
T |
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| Q |
118 |
gcaaaatcggataattgcagaaccaaaccaacagaacatcaaaacaagacggaccgtgaatggccctatatcacatccccttctaaaaaccagctctgac |
217 |
Q |
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| T |
21021700 |
gtaaaattggataatcacataaccaaaccaacataacaccaaaacaagacatatcgtgaatgtccatctatcccaaccccttctcaaaaccagctgcgac |
21021601 |
T |
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| Q |
218 |
gcgaaccacaagggaaacacatttttgaatcacataatagc |
258 |
Q |
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| T |
21021600 |
gcgaaccacaagagaaatgcatttttgaatcacagaatagc |
21021560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 298 - 387
Target Start/End: Complemental strand, 21021517 - 21021431
Alignment:
| Q |
298 |
taagacacccaaacgaaactgacaacgtagatgcaacgcacccacgccgtttttacactctatgccagaagcagcacagagaggagaaca |
387 |
Q |
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| T |
21021517 |
taagacacacaaacgaaactgacgac-tagatgcaacacatccacgccatttttacact--attccagaagcagcaaaaagaggagaaca |
21021431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 21076053 - 21076021
Alignment:
| Q |
17 |
caacagtaagtctcaaccaccacttgaattaaa |
49 |
Q |
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| T |
21076053 |
caacagtaagtctcaatcaccacttgaattaaa |
21076021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 248
Target Start/End: Original strand, 50730 - 50957
Alignment:
| Q |
21 |
agtaagtctcaaccaccacttgaattaaacatccaaaataaatgtcacgatctttcgagctaacagcccaaagtgaaaatttatccaagacaacggagca |
120 |
Q |
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||||||||||||| |||| ||||| ||||||||| ||||| | ||| |||||||||| |||| ||||||||||| ||| ||| ||| ||| | || |
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| T |
50730 |
agtaagtctcaacggccacgtgaatcaaacatccaggataaaggccacattctttcgagccaacaatccaaagtgaaagtttgtcctagataactaaaca |
50829 |
T |
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| Q |
121 |
aaatcggataattgcagaaccaaaccaacagaacatcaaaacaagacggaccgtgaatggccctatatcacatccccttctaaaaaccagctctgacgcg |
220 |
Q |
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|||| |||||| ||||| || ||||||| |||| | ||||| ||| ||||||| | | |||||| || |||||||| ||||||| | | ||| |
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| T |
50830 |
caatcagataatcacagaatcagaccaacataacaccggaacaaagcgggccgtgaacgatcatatatcccagccccttctcaaaaccatcctcaatgcg |
50929 |
T |
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| Q |
221 |
aaccacaagggaaacacatttttgaatc |
248 |
Q |
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| T |
50930 |
aaccaaaagggaaacacgtttttgaatc |
50957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 13169252 - 13169300
Alignment:
| Q |
186 |
tatcacatccccttctaaaaaccagctctgacgcgaaccacaagggaaa |
234 |
Q |
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| T |
13169252 |
tatcacatccccttctcaaaaccaaccccgacacgaaccacaagggaaa |
13169300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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