View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19019_low_6 (Length: 368)
Name: NF19019_low_6
Description: NF19019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19019_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 25 - 296
Target Start/End: Complemental strand, 34562556 - 34562294
Alignment:
| Q |
25 |
tagttgtttcttttatgcattgttccattttaattatgacacaagtttggtatgtaattgatcaattataattgaacnnnnnnnntgctggttgttttca |
124 |
Q |
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| T |
34562556 |
tagtagtttcttttatgcattgttccattttagttatgacacaagtttggtatgtaattgatcaattataattgaacaaaaaaa-tgctggttgttttca |
34562458 |
T |
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| Q |
125 |
cgttctctctattttttggtacaatagttctgcactttctaaatagggggatagaaactttcaaatctacattggtcaaaagactttcataaatgacaaa |
224 |
Q |
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| T |
34562457 |
cgttctctctattttttggtac--tagttctgcactttctaaatagggggatagaaat------atctacattggtcaaaagactttcataaatgacaaa |
34562366 |
T |
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| Q |
225 |
ttgacaactgcttttaattttcatgtactagtaccatacatattgttgctaaatattctttcaaaaaatata |
296 |
Q |
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| T |
34562365 |
ttgacaactgcttttaattttcatgtactagtaccatacatattgttgctaaatattctttcaaaaaatata |
34562294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 25 - 274
Target Start/End: Complemental strand, 34571299 - 34571043
Alignment:
| Q |
25 |
tagttgtttcttttatgcattgttccattttaattatgacacaagtttggtatgtaattgatcaattataattgaac--nnnnnnnntgctggttgtttt |
122 |
Q |
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| T |
34571299 |
tagtagtttcttttatgcattgttc-atattaattatgaca-aagtttggtatgtaattaatcaattacaattgaacaaaaaaaaaaagcttgttgtttt |
34571202 |
T |
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| Q |
123 |
cacgttctctctattttttg--gtacaatagttctgcactttctaaatagggggatagaaactttcaaatctacattggtcaaaagactttcataaatga |
220 |
Q |
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| T |
34571201 |
cgttttctctctatcgactgaaatactctggttctgcactttctaaatagggaaatagaaactttcaaatctacattggtcaaaagactttcataaatgt |
34571102 |
T |
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| Q |
221 |
caaattgacaactgctttta-----attttcatgtactagtaccatacatattgttgct |
274 |
Q |
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| T |
34571101 |
caaattgacaactgcttttaattatattttcatgtactagtaccatacatattgttgct |
34571043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 298 - 362
Target Start/End: Complemental strand, 34562011 - 34561947
Alignment:
| Q |
298 |
tttatcaattcatctttcttttatacgtggtgaaggtgcttagggttatggactagtattatcta |
362 |
Q |
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| T |
34562011 |
tttatcaattcatctttcttttatacgtggtgaaggtgcttagggttatggactagtattatcta |
34561947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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