View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19019_low_9 (Length: 254)
Name: NF19019_low_9
Description: NF19019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19019_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 31935913 - 31935671
Alignment:
| Q |
1 |
aaactagtggcggttcaggttcatgtcagcccactggatgtggagaggatcttaaccggaggtgtccctcggagctgagtgtggacggtggtgacgcgtg |
100 |
Q |
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| T |
31935913 |
aaactagtggcggttcaggttcatgtcaggccactggatgtggagaggatcttaaccggaggtgtccctcggagctgagagtggacggtggtgacgcgtg |
31935814 |
T |
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| Q |
101 |
taatagcgcgtgtggtgcgtttgggacaccggagtattgttgtagtggcgcgtttggttcgccatcgagttgttcgccttcggtttattcggaaatgttt |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31935813 |
taatagcgcgtgtggcgcgtttgggacaccggagtattgttgtagtggcgcgtttggttcgccatcgagttgttcgccttcggtttattcggaaatgttt |
31935714 |
T |
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| Q |
201 |
aaatctgcttgtcctaaatcttatagctatgcgtttgatgatg |
243 |
Q |
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| T |
31935713 |
aaatctgcttgtcctaaatcttatagctatgcgtttgatgatg |
31935671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 95 - 243
Target Start/End: Complemental strand, 27975539 - 27975391
Alignment:
| Q |
95 |
cgcgtgtaatagcgcgtgtggtgcgtttgggacaccggagtattgttgtagtggcgcgtttggttcgccatcgagttgttcgccttcggtttattcggaa |
194 |
Q |
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| T |
27975539 |
cgcgtgtaagagcgcgtgtgaggcttttggtagtcctgagtattgttgtagtggcgcgtatggttcaccggcgacttgtagaccgtcgatttactcggaa |
27975440 |
T |
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| Q |
195 |
atgtttaaatctgcttgtcctaaatcttatagctatgcgtttgatgatg |
243 |
Q |
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| T |
27975439 |
atgtttaaaaatgcttgccctagatcgtatagctacgcttatgatgatg |
27975391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 96 - 155
Target Start/End: Original strand, 8810723 - 8810782
Alignment:
| Q |
96 |
gcgtgtaatagcgcgtgtggtgcgtttgggacaccggagtattgttgtagtggcgcgttt |
155 |
Q |
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||||||||||| || ||||| |||||||||| |||||| |||||||||| ||||||||| |
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| T |
8810723 |
gcgtgtaatagtgcttgtggcgcgtttgggaaaccggaatattgttgtaacggcgcgttt |
8810782 |
T |
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