View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1901_high_14 (Length: 241)
Name: NF1901_high_14
Description: NF1901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1901_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 11 - 131
Target Start/End: Complemental strand, 39825702 - 39825584
Alignment:
| Q |
11 |
gtgagatgaaagagtgaatcaaatacacgacaaaatctcaactctcaaatacaaacaattttgtggccggctacttcacatgccaccaaaatccaatact |
110 |
Q |
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| T |
39825702 |
gtgagatgaaagagtgaatcaaatacacgacaaaatctcaactc--aaatacaaacaattttgtggccggctacttcacatgccaccaaaatccaatact |
39825605 |
T |
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| Q |
111 |
acaatttacagattacaggta |
131 |
Q |
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| T |
39825604 |
acaatttacagattacaggta |
39825584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 188 - 225
Target Start/End: Complemental strand, 39825531 - 39825494
Alignment:
| Q |
188 |
tcctaacctcagaagaaaagggtatctttctcttttgt |
225 |
Q |
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| T |
39825531 |
tcctaacctcagaagaaaagggtatctttctcttttgt |
39825494 |
T |
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