View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1901_high_16 (Length: 241)
Name: NF1901_high_16
Description: NF1901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1901_high_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 49423725 - 49423946
Alignment:
| Q |
1 |
cgtgatattgcaaatctgtaatggccgaaattgtacgagcataaaaaatgttatccctaatgtcttgaaagttgaatctatcaaccatctccatctttaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
49423725 |
cgtgatattgcaaatctgtaatggccgaaattgtacgagcataaaaaatgttatccctaatgtcttgaaagttgaatctatcaaccatctccaactttaa |
49423824 |
T |
|
| Q |
101 |
gtttaaaatgaaggttgaacaattgaattaaaacactgaacaagcttccccaaatggcttgttaagacagttcaaaagcttgattctcatttccattatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
49423825 |
gtttaaaatgaaggttgaacaattgaattaaaacactgaacaagcttccccaaatggcttgttaagacagttcaaaagcttgattctca-ttccattatt |
49423923 |
T |
|
| Q |
201 |
ttttgaatttattagacctataa |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
49423924 |
ttttgaatttattagacctataa |
49423946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 44 - 191
Target Start/End: Complemental strand, 43363293 - 43363148
Alignment:
| Q |
44 |
aaaaatgttatccctaatgtcttgaaagttgaatctatcaaccatctccatctttaagtttaaaatgaaggttgaacaattgaattaaaacactgaacaa |
143 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| || ||||||| | | |||||||| || |||||||||||||| | ||||||| ||||| |
|
|
| T |
43363293 |
aaaaatgttatcccttatgtcttgaaagttgaatctattaatcatctcctacat--agtttaaactggttgttgaacaattgaagtgaaacactaaacaa |
43363196 |
T |
|
| Q |
144 |
gcttccccaaatggcttgttaagacagttcaaaagcttgattctcatt |
191 |
Q |
| |
|
||||||||||||| || |||||||| ||||||| ||| |||||||| |
|
|
| T |
43363195 |
gcttccccaaatgactcattaagacaattcaaaaacttccttctcatt |
43363148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 37 - 180
Target Start/End: Original strand, 49425917 - 49426060
Alignment:
| Q |
37 |
gagcataaaaaatgttatccctaatgtcttgaaagttgaatctatcaaccatctccatctttaagtttaaaatgaaggttgaacaattgaattaaaacac |
136 |
Q |
| |
|
|||| ||| ||||| ||||||||||||||||||||||||| |||| ||||||||| | || |||||||| | ||||||||| |||||||| ||| | |
|
|
| T |
49425917 |
gagcgtaagaaatgctatccctaatgtcttgaaagttgaaactatgaaccatctcatacatttagtttaaactagaggttgaactattgaattgaaaagc |
49426016 |
T |
|
| Q |
137 |
tgaacaagcttccccaaatggcttgttaagacagttcaaaagct |
180 |
Q |
| |
|
|||||||| ||||||||||| | ||||||||||||||||||| |
|
|
| T |
49426017 |
tgaacaagtttccccaaatgattcattaagacagttcaaaagct |
49426060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 88
Target Start/End: Original strand, 17640992 - 17641030
Alignment:
| Q |
50 |
gttatccctaatgtcttgaaagttgaatctatcaaccat |
88 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
17640992 |
gttatccctaaattcttgaaagttgaatctatcaaccat |
17641030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University