View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1901_high_18 (Length: 213)
Name: NF1901_high_18
Description: NF1901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1901_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 134 - 194
Target Start/End: Complemental strand, 30905311 - 30905251
Alignment:
| Q |
134 |
acacaagtattaatttaagaaaatagtactatcatatattgaatgtaagtgtagcgtaggc |
194 |
Q |
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| T |
30905311 |
acacaagtattaatttaagaaaatagtactaccatatattgaatgtaagtgtagcataggc |
30905251 |
T |
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Target: chr1; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 30905368 - 30905311
Alignment:
| Q |
23 |
taagatatcaaagtataatatatatttcgttaattagataaacatttaaaacctttgcca |
82 |
Q |
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| T |
30905368 |
taagatatcaaagtataatatat--ttcgttaattagataaacatttaaaacctttgcca |
30905311 |
T |
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