View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1901_high_3 (Length: 435)
Name: NF1901_high_3
Description: NF1901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1901_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 8163286 - 8163702
Alignment:
| Q |
1 |
aagactactattttaatttagagaatgataattagacatcttataagattccggttgattcaatatttcagctctatagacaaattacacgtaaattcaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
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| T |
8163286 |
aagactactattttaatttagagaatgataattagacatcttataagattccggttgattcaatatttcggctctacagacaaattacacgtaaattcaa |
8163385 |
T |
|
| Q |
101 |
ttgtaattgtttgtttaatgttcttttgaaacgaccaacgttagtattgtttgtaggaaaatgttttgttatcagacttcttaacaaatattatttggac |
200 |
Q |
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| T |
8163386 |
ttgtaattgtttgtttaatgttcttttgaaacaaccaatgttagtattgttggtaggaaagtgtttcgttatcagacttcttaacaaatattatttgaac |
8163485 |
T |
|
| Q |
201 |
acttgttaatatgaccttaattgaaaaatgttacgactcgaaatcaaatcattgaatttcatgtcacccttttccttaactatttcacctcaagcaccaa |
300 |
Q |
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| T |
8163486 |
acttgttagtatgaccttaatgaaaaaacgttacgactcggaatcaaatcattgaatttcatgtcacccttttccttaactatttcacctcaagcaccaa |
8163585 |
T |
|
| Q |
301 |
atcatccttatatcccgtaagtatttgcttaatgttgatagttctcttcatgatatgttgataatcctccattgttgctaaatgttgtaagtcaataaaa |
400 |
Q |
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| T |
8163586 |
atcatccttatatcccgtaagtatttgcttaatgttgatagttctcttcatgatatgttgataatcctccattgttgct-aatgttgtaagtcaataaaa |
8163684 |
T |
|
| Q |
401 |
tataaacatagttatatg |
418 |
Q |
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| T |
8163685 |
tataaacatagttatatg |
8163702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 8162999 - 8163203
Alignment:
| Q |
1 |
aagactactattttaatttagagaatgataattagacatcttataagattccggttgattcaatatttcagctctatagacaaattacacgtaaattcaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8162999 |
aagactactattttaatttagagaatgataattagacatcttataagatttcggttgattcaatatttcagctctatagacaaattacacgtaaattcaa |
8163098 |
T |
|
| Q |
101 |
ttgtaattgtttgtttaatgttcttttgaaacgaccaacgttagtattgtttgtaggaaaatgttttgttatcagacttcttaacaaatattatttggac |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||| |
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| T |
8163099 |
ttgtaattgtttgttcaatgttcttttgaaacgaccaacgttagtattgtttgtaggaaaatgttttgttatcaga---cttaacaaatatcattaggac |
8163195 |
T |
|
| Q |
201 |
acttgtta |
208 |
Q |
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|||||||| |
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| T |
8163196 |
acttgtta |
8163203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 209
Target Start/End: Original strand, 20975349 - 20975386
Alignment:
| Q |
172 |
tcagacttcttaacaaatattatttggacacttgttaa |
209 |
Q |
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| T |
20975349 |
tcagactttttaacaaatattttttggacacttgttaa |
20975386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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