View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1901_low_1 (Length: 781)
Name: NF1901_low_1
Description: NF1901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1901_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 369; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 21 - 421
Target Start/End: Original strand, 15871280 - 15871680
Alignment:
| Q |
21 |
agctgaaaggacttgacatagagactatgcaacaacattacactgtgtaatataagcaacacagacaaatgttgttgtagatagttaaggaaagaaaaga |
120 |
Q |
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| T |
15871280 |
agctgaaaggactggacatagagactatgcaacaacattacactgtgtaatataagcaacacagacaaatgttgttgtagatagttaaggaaagaaaaga |
15871379 |
T |
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| Q |
121 |
taaattgccattaggtagggagagaaattctgtgatatatctctcccagtgttttactttattaatgcatttctagtaaacttttgatgcttgagacaaa |
220 |
Q |
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| T |
15871380 |
taaattgccattaggtagggagagaaattctgtgatatatctctcccagtgttttactttattaatgcatttctagtaaacttttgatgcttgagacaaa |
15871479 |
T |
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| Q |
221 |
gaagttttagtttcaatcaaatattatatggttctatatgcttttgagtccaccaatttctcaatttgtggttttcatttttattttatgcaaacattat |
320 |
Q |
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| T |
15871480 |
gaagttttagtttcaatcaaatattatatgcttctctatgcttttgagtccaccaatttctcaatttgtggttttcatttttattttatgcaaacattat |
15871579 |
T |
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| Q |
321 |
tgggaaacttgtgtgaataagcattatgaaaaatttcaacatggtctcaactcattctcatgttatttttgtcttttggaaacactatgacaagcaaata |
420 |
Q |
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| T |
15871580 |
tgggaaacttgtgtgaataagcattatgaaaattttcaacatggtagcaactcattttcatgttatttttgtcttttgggaacactatgacaagcaaata |
15871679 |
T |
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| Q |
421 |
c |
421 |
Q |
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| T |
15871680 |
c |
15871680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 433 - 695
Target Start/End: Original strand, 15871728 - 15871987
Alignment:
| Q |
433 |
cgaccgataaagaattgattcataccttacatggtcatggattcatcatcgcttcccgcgtaaggatataatttgtaggtaatctatgaatccttattct |
532 |
Q |
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| T |
15871728 |
cgaccgataaagaattgattcatacctcacatggtcatggattcatcatcgcttcccgcgtaaggatataatttgtaggtaatctatgaatgtttattct |
15871827 |
T |
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| Q |
533 |
gagtttttatgcctgcctagatgaacctccaggaccaaactcgcaaaaacnnnnnnnnncttagaaaaagagcgtaagaaagtaatctttaattaagtgc |
632 |
Q |
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| T |
15871828 |
gagtttttatgcctgtc-cgatgagcctccaggaccaaactcgcaaaaac--tttttttcttaaaaaaagagcataagaaagtaatctttaatcaagtac |
15871924 |
T |
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| Q |
633 |
ctcttttgagctttgacgtttgtcttaactagcctctgggtctcaacttgcatacaattatac |
695 |
Q |
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| T |
15871925 |
ctcttttgagctttgatgtttgtcttagctagcctctgagtctcaacttgcatacaattatac |
15871987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 714 - 743
Target Start/End: Original strand, 15871999 - 15872028
Alignment:
| Q |
714 |
ctacaaataagagtacaagaaagaaatata |
743 |
Q |
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| T |
15871999 |
ctacaaataagagtacaagaaagaaatata |
15872028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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