View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1901_low_10 (Length: 379)
Name: NF1901_low_10
Description: NF1901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1901_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 4e-91; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 35 - 224
Target Start/End: Complemental strand, 4108252 - 4108064
Alignment:
| Q |
35 |
gtgtttatgaatactatatgcccacaaaatgtatagatacgatataagcgtttataagggctttttatttcataagatactttatgaaatactgtatgag |
134 |
Q |
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| T |
4108252 |
gtgtttatgactactatatgcccacaaaatgtatagatacgatataagggtttataagggctttt-atttcataagatactttatgaaatactgtatgag |
4108154 |
T |
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| Q |
135 |
gtgttggtatagtagcaacgatgttatgtaaggtagaattttttactcatgataattgatgtaggaacattgatgaaataaatgtacata |
224 |
Q |
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| T |
4108153 |
gtgttggtatagtagcaacgatgttatgtaaggtagaattttttactcatgataattcatgtaggaacattgatgaaataaatgtacata |
4108064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 246 - 369
Target Start/End: Complemental strand, 34779519 - 34779396
Alignment:
| Q |
246 |
gaaagctttgatgcttccgttgtaacaatgaagcactttaagatggcaatcaaacaggttcagccctcagaatttcagtcctaccaaaagctgtcagcaa |
345 |
Q |
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| T |
34779519 |
gaaagctttgatgcttccgttgtaacaatgaagcactttaagatggcaatcaaacaggttcagccctcagaatttcagtcctaccaaaagctgtcagcaa |
34779420 |
T |
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| Q |
346 |
aatttcaaagggctgtgttctctg |
369 |
Q |
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| T |
34779419 |
aatttcaaagggccgtgttctctg |
34779396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 246 - 367
Target Start/End: Original strand, 34682858 - 34682979
Alignment:
| Q |
246 |
gaaagctttgatgcttccgttgtaacaatgaagcactttaagatggcaatcaaacaggttcagccctcagaatttcagtcctaccaaaagctgtcagcaa |
345 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||| ||||| ||||||||| |||||| ||||||||| |
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| T |
34682858 |
gaaaactttgatgcttccgttgtaacaatgaagcactttaagacggcaattgaacaagttcagcccacagaaactcagtcctatcaaaagttgtcagcaa |
34682957 |
T |
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| Q |
346 |
aatttcaaagggctgtgttctc |
367 |
Q |
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| T |
34682958 |
aatttcaaagggctgtgttctc |
34682979 |
T |
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