View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1901_low_11 (Length: 371)
Name: NF1901_low_11
Description: NF1901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1901_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 13 - 338
Target Start/End: Original strand, 16613347 - 16613674
Alignment:
| Q |
13 |
gagaagcttaattgttgtgaagagtgtgtctccaattatgaaaaagaagctcaattgttcaaaccagaccagaagaatctgttgccttcatggcttcagt |
112 |
Q |
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| T |
16613347 |
gagaagcttaattgttgtgaagagtgtgtctccaattatgaaaaagaagctcaattgttcaaaccagaccagaagaatctgttgccttcatggcttcagt |
16613446 |
T |
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| Q |
113 |
ctcatagcacagaagcacgtcagaaggtagcaaaattttatcttttttcccaacttgtacaagaatacaaaacactaaaaaacctaattcctaaaaagat |
212 |
Q |
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| T |
16613447 |
ctcatagcacagaagcacgtcagaaggtagcaaaattttatcttttttcccaacttgtacaagaatacaaaacactaaaaaacctaattcctaaaaagat |
16613546 |
T |
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| Q |
213 |
ttatctcatataacgcgtcaaatctgaataatttacaccgtccatttgagatcaaccagtctacgttaattaatgtgtcacacatttaa--cgtcaaata |
310 |
Q |
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| T |
16613547 |
ttatctcatataacgcgtcaaatctgaataatttacaccatcgatttgagatcaaccggtctaggttaattaatgtgtcacacatttaacgcgtcaaatc |
16613646 |
T |
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| Q |
311 |
tgaatctagtgtcacaaacacatttatt |
338 |
Q |
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| T |
16613647 |
tgaatctagtgtcacaaacacatttatt |
16613674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 52805791 - 52805742
Alignment:
| Q |
19 |
cttaattgttgtgaagagtgtgtctccaattatgaaaaagaagctcaatt |
68 |
Q |
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| T |
52805791 |
cttaattgttgtgaagaatgtgcttccaattatgaaaaagaagctcaatt |
52805742 |
T |
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