View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1901_low_12 (Length: 338)
Name: NF1901_low_12
Description: NF1901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1901_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 20 - 327
Target Start/End: Complemental strand, 33903593 - 33903286
Alignment:
| Q |
20 |
aaatgatcccttccacctgacctcttccattcctcttgactcatcaaatacctcaccaacttctcttgcaacaccttgtttctactcctcctttcatgtg |
119 |
Q |
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| T |
33903593 |
aaatgatcccttccacctgacctcttccattcctcttgattcatcaaatacctcaccaacttctcttgcaacaccttgtttctactcctcctttcatgtg |
33903494 |
T |
|
| Q |
120 |
gacctgttttggagtgtctgttataagtcaaagatgnnnnnnntggcacaaatataacatcagcttcggtcgagtttctaactctggttacaattctagc |
219 |
Q |
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| T |
33903493 |
gacctgttttggagtgtctgttataagtcaaagatgaaaaaaatggcacaaatataacatcagcttcggtcgagtttctaactctggttacaattctagc |
33903394 |
T |
|
| Q |
220 |
aggataaatttctggcaattctgaagcaagaatatctaatgtaagccaatattcaatactgtgttgtaaattcaaaccaccagggtaatgtggtatcttg |
319 |
Q |
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| T |
33903393 |
aggataaatttctggcaattctgaagcaagaatatctaatgtaagccaatattcaatactgtgttgtaaattcaaaccaccagggtaatgtggtatcttg |
33903294 |
T |
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| Q |
320 |
gttttcat |
327 |
Q |
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|||||||| |
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| T |
33903293 |
gttttcat |
33903286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 238 - 307
Target Start/End: Original strand, 9327790 - 9327859
Alignment:
| Q |
238 |
ttctgaagcaagaatatctaatgtaagccaatattcaatactgtgttgtaaattcaaaccaccagggtaa |
307 |
Q |
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|||||| |||||||| ||||||||||||||| |||| ||||| ||||| ||||||||||| ||||||||| |
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| T |
9327790 |
ttctgaggcaagaatgtctaatgtaagccaaaattctatactatgttgcaaattcaaacctccagggtaa |
9327859 |
T |
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