View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1901_low_14 (Length: 317)
Name: NF1901_low_14
Description: NF1901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1901_low_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 5272941 - 5273242
Alignment:
| Q |
1 |
gcattcctttaatcatataataataatattattgtcagtgtcaaatcttctgtctcacaactaattaatcaaatttttcctnnnnnnnnn-ctaattaat |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5272941 |
gcattcctttaatcatataataataatattattgtcagtgtcaaatcttctgtctcacaactaattaatcaaatttttcctaaaagaaaaactaattaat |
5273040 |
T |
|
| Q |
100 |
cagaattatcatataatgcactagcctagtttacctttctatgtccctgacaggtagtgtttgctacctatttgatatgaaaaatgttgtaacatcacat |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5273041 |
cagaattatcatataatgcactagcctagtttacctttctatgtccctgacaggtagtgtttgctacctatttgatatgaaaaatgttgtaacatcacat |
5273140 |
T |
|
| Q |
200 |
tttctttccaactaaacgaaacctttcaccaatgagcatcctcaataaaagccaatcccttctccctcattcctcacataaggacacaaataaagtacta |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5273141 |
tttctttccaactaaacgaaacctttcaccaatgagcatcctcaataaaagccaatcccttctccctcattcctcacataaggacacaaataaagtacta |
5273240 |
T |
|
| Q |
300 |
tc |
301 |
Q |
| |
|
|| |
|
|
| T |
5273241 |
tc |
5273242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 199 - 300
Target Start/End: Original strand, 5268732 - 5268833
Alignment:
| Q |
199 |
ttttctttccaactaaacgaaacctttcaccaatgagcatcctcaataaaagccaatcccttctccctcattcctcacataaggacacaaataaagtact |
298 |
Q |
| |
|
||||||||| | |||||| ||||||| || |||| ||||||||||||||||| |||||| ||||||||||||||||||| |||||||| | | ||||||| |
|
|
| T |
5268732 |
ttttctttctacctaaactaaaccttgcatcaattagcatcctcaataaaaggcaatccattctccctcattcctcacaaaaggacaccagttaagtact |
5268831 |
T |
|
| Q |
299 |
at |
300 |
Q |
| |
|
|| |
|
|
| T |
5268832 |
at |
5268833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University