View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1901_low_15 (Length: 308)

Name: NF1901_low_15
Description: NF1901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1901_low_15
NF1901_low_15
[»] chr8 (8 HSPs)
chr8 (222-300)||(3777657-3777735)
chr8 (17-93)||(3769684-3769760)
chr8 (225-295)||(3701368-3701438)
chr8 (225-300)||(3708130-3708205)
chr8 (225-300)||(3769990-3770065)
chr8 (31-122)||(3777442-3777536)
chr8 (225-300)||(3719639-3719714)
chr8 (225-295)||(33004902-33004972)


Alignment Details
Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 222 - 300
Target Start/End: Original strand, 3777657 - 3777735
Alignment:
Q  222 agatcttccattctttgtcgaatctcacttcgttcttcacccatcattagatctctaatcaccttagcaatttcatctc 300  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3777657 agatcttcaattctttgtcgaatctcacttcgttcttcacctatcattagatctctaatcaccttagcaatttcatctc 3777735  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 3769684 - 3769760
Alignment:
Q  17 attttataacaatgataatgaaacaaatcaacttgaagtatcattctcgtacaacacccacatttaggaagaaaaaa 93  Q
    ||||||||| ||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3769684 attttataataattataataaaacaaaccaacttgaagtatcattctcgtacaacacccacatttaggaagaaaaaa 3769760  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 225 - 295
Target Start/End: Complemental strand, 3701438 - 3701368
Alignment:
Q  225 tcttccattctttgtcgaatctcacttcgttcttcacccatcattagatctctaatcaccttagcaatttc 295  Q
    ||||| ||||||||||||||||||||||||||||| || | |||||||||| ||| |||||||||||||||    
T  3701438 tcttcaattctttgtcgaatctcacttcgttcttctccgagcattagatctttaaccaccttagcaatttc 3701368  T

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Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 225 - 300
Target Start/End: Complemental strand, 3708205 - 3708130
Alignment:
Q  225 tcttccattctttgtcgaatctcacttcgttcttcacccatcattagatctctaatcaccttagcaatttcatctc 300  Q
    ||||| |||||||||||||||||||| |||||||| || | |||||||| ||||| ||||||||||||||| ||||    
T  3708205 tcttcaattctttgtcgaatctcactccgttcttctccgagcattagatgtctaaccaccttagcaatttcctctc 3708130  T

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Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 225 - 300
Target Start/End: Original strand, 3769990 - 3770065
Alignment:
Q  225 tcttccattctttgtcgaatctcacttcgttcttcacccatcattagatctctaatcaccttagcaatttcatctc 300  Q
    ||||| |||||||||||||||||||| |||||||| || | |||||||||| ||| ||||||||||||||| ||||    
T  3769990 tcttcaattctttgtcgaatctcactccgttcttctccgagcattagatctttaaccaccttagcaatttcctctc 3770065  T

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Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 122
Target Start/End: Original strand, 3777442 - 3777536
Alignment:
Q  31 ataatgaaacaaatcaacttgaagtatcattctcgtacaacacccacatttaggaagaaaaaa---gtattaaacacattgaaataaactcacag 122  Q
    ||||| ||||||| |||||| |||||||||| | || ||||| | ||||| ||||||||||||   ||| |||||||||||||||||||||||||    
T  3777442 ataataaaacaaaccaacttcaagtatcattgtggtgcaacatcaacattaaggaagaaaaaaaatgtaataaacacattgaaataaactcacag 3777536  T

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Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 225 - 300
Target Start/End: Complemental strand, 3719714 - 3719639
Alignment:
Q  225 tcttccattctttgtcgaatctcacttcgttcttcacccatcattagatctctaatcaccttagcaatttcatctc 300  Q
    |||||||||||||||||||||||||| |||| ||| || | |||||||||  ||| ||||||||||||||| ||||    
T  3719714 tcttccattctttgtcgaatctcactccgtttttctccgagcattagatccttaaccaccttagcaatttcctctc 3719639  T

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Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 33004902 - 33004972
Alignment:
Q  225 tcttccattctttgtcgaatctcacttcgttcttcacccatcattagatctctaatcaccttagcaatttc 295  Q
    ||||| |||||||||  ||| ||||| | ||||||||| | ||||| ||||||||||||||||||||||||    
T  33004902 tcttcaattctttgttcaatttcactcctttcttcaccaagcattaaatctctaatcaccttagcaatttc 33004972  T

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