View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1901_low_18 (Length: 264)

Name: NF1901_low_18

Description: NF1901

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF1901_low_18

[»] chr8 (2 HSPs)

Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 2)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 115; E-Value: 2e-58

Query Start/End: Original strand, 16 - 182

Target Start/End: Original strand, 9481744 - 9481907

Alignment:

Q	16	agtgtgactcgtgtaactaatatgttgtctttaaataa-ttattgtctaatgaagtagttgttttcatctattataagtttgagagaaagatgtaacata	114	Q
		\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	9481744	agtgtgacttttgtaactaatatgttgtctttaaataaattattgtctaatgtagtagtt----tgatctattataagtttgagagaaagatgtaacata	9481839	T

Q	115	attaaaaacttattggtaacttagttaatacgtttggaaacctgaaatgggtttttataaaaagtgac	182	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	9481840	tttaaaaatttattggtaacttagttaatacatttggaaacctgaaatgggtttttataaaaagtgac	9481907	T

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Target: chr8; HSP #2

Raw Score: 49; E-Value: 4e-19

Query Start/End: Original strand, 192 - 248

Target Start/End: Original strand, 9485013 - 9485069

Alignment:

Q	192	aactttttaagactgcaattaaactatgcagtacatattccaaaacatgcatatttt	248	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	9485013	aactttttaagactgcaattaaaccatgcagtacttattccaaaacatgcatatttt	9485069	T

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