View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1901_low_2 (Length: 486)
Name: NF1901_low_2
Description: NF1901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1901_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 158 - 470
Target Start/End: Complemental strand, 44787364 - 44787052
Alignment:
| Q |
158 |
caacacaatggcaaaaacagaagaaaggatcacggatttagaatcagtgaagaggtacttggagaagaaaggagaagaattagcaccaacggtagacaat |
257 |
Q |
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| T |
44787364 |
caacacaatggcaaaaacagaagaaaggatcacggatttagaatcagtgaagaggtacttggagaagaaaggagaagaatcagcaccaacggtagacaat |
44787265 |
T |
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| Q |
258 |
gaattgcctcaggagtttttgggacatctagtcgtacgtggcttacgccttgatctcattgagcctggccgtatcgttttctcaatgaagatacctccca |
357 |
Q |
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| T |
44787264 |
gaattgcctcaggagtttttgggacatctagtcgtacgtggcttacgccttgatctcattgagcctggccgtatcgttttctcaatgaagatacctccca |
44787165 |
T |
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| Q |
358 |
atttacttgttcgtatcttactcttttcatctttttatctttccctaataaataacattaatggattttgttctttttcatttatttgcagaattctagt |
457 |
Q |
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| T |
44787164 |
atttacttgttcgtatcttactcttttcatctttttatctttccataataaataacattaatggattttgttctttttcatttatttgcagaattctagt |
44787065 |
T |
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| Q |
458 |
aactgcttacacg |
470 |
Q |
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| T |
44787064 |
aactgcttacacg |
44787052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 44787506 - 44787427
Alignment:
| Q |
15 |
agtaacaaacatttattgtcatttaattatgaacaatgataatttctttccctttaatcaatttgtttttatatgaacat |
94 |
Q |
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| T |
44787506 |
agtaataaacatttattgtcatttaattatgaacaatgataatttctttccctttaatcaatttgtttttatatgaacat |
44787427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 248 - 388
Target Start/End: Complemental strand, 44793091 - 44792951
Alignment:
| Q |
248 |
ggtagacaatgaattgcctcaggagtttttgggacatctagtcgtacgtggcttacgccttgatctcattgagcctggccgtatcgttttctcaatgaag |
347 |
Q |
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| T |
44793091 |
ggtagacgatgaattgcctcaggagtttctggaacatctaaccttgcgcggcctacgattggatcgcattgaacctggtcgtgtcgtcttctcaatgaac |
44792992 |
T |
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| Q |
348 |
atacctcccaatttacttgttcgtatcttactcttttcatc |
388 |
Q |
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| T |
44792991 |
atacctccacgtttactcgttcgtatcctacactattcatc |
44792951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 309 - 372
Target Start/End: Complemental strand, 44801313 - 44801250
Alignment:
| Q |
309 |
gatctcattgagcctggccgtatcgttttctcaatgaagatacctcccaatttacttgttcgta |
372 |
Q |
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| T |
44801313 |
gatctcattgagcctggccatgtcgttttctcaatgaacatacctccacgtttactcgttcgta |
44801250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 234
Target Start/End: Complemental strand, 44805922 - 44805880
Alignment:
| Q |
192 |
gatttagaatcagtgaagaggtacttggagaagaaaggagaag |
234 |
Q |
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| T |
44805922 |
gatttggaatcagcgaagaggtacttggaggagaaaggagaag |
44805880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 352
Target Start/End: Complemental strand, 44805843 - 44805762
Alignment:
| Q |
271 |
agtttttgggacatctagtcgtacgtggcttacgccttgatctcattgagcctggccgtatcgttttctcaatgaagatacc |
352 |
Q |
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| T |
44805843 |
agtttctggaacatctaatcttgcgtggcctacgcttcgatgtcattgagcctggccgtgtcattttcacaatgaacatacc |
44805762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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