View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1901_low_27 (Length: 210)
Name: NF1901_low_27
Description: NF1901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1901_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 10014894 - 10015076
Alignment:
| Q |
19 |
cattcatatcattttacataattagcatcacatcaatcgtagtagaaattttcagaatttatgctggcattgaagtataggtttgtcttgatcatagcta |
118 |
Q |
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| T |
10014894 |
cattcatatcattttacataattagcatcacatcaatcatagtagaaattttcagaatttatgctggcattgaagtataggtttgtcttgatcatagata |
10014993 |
T |
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| Q |
119 |
tcacaataaatagctatgaagttcatggaacttggaacaaggtcagatactttctatactgaacaagctaccaggtattcatt |
201 |
Q |
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| T |
10014994 |
tcacaataaatagctatgaagttcatgaaacttggaacaaggtcagatactttctatacagaacaagctaccaggtattcatt |
10015076 |
T |
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Target: chr4 (Bit Score: 50; Significance: 8e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 134 - 199
Target Start/End: Original strand, 56184937 - 56185002
Alignment:
| Q |
134 |
atgaagttcatggaacttggaacaaggtcagatactttctatactgaacaagctaccaggtattca |
199 |
Q |
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| T |
56184937 |
atgaagttcatgaaacttgggacaaggccagatactttctacactgaacaagctaccaggtattca |
56185002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 134 - 199
Target Start/End: Original strand, 31191665 - 31191730
Alignment:
| Q |
134 |
atgaagttcatggaacttggaacaaggtcagatactttctatactgaacaagctaccaggtattca |
199 |
Q |
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| T |
31191665 |
atgaagttcatgaaacttgggacaaagccagatactttctacactgaacaagctaccaggtattca |
31191730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 134 - 200
Target Start/End: Complemental strand, 16808205 - 16808139
Alignment:
| Q |
134 |
atgaagttcatggaacttggaacaaggtcagatactttctatactgaacaagctaccaggtattcat |
200 |
Q |
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| T |
16808205 |
atgaagttcatgaaacttgggacaaagccagatactttctagactgaacaagctaccaggtattcat |
16808139 |
T |
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