View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1901_low_3 (Length: 461)

Name: NF1901_low_3
Description: NF1901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1901_low_3
NF1901_low_3
[»] scaffold0026 (1 HSPs)
scaffold0026 (1-450)||(12444-12872)
[»] scaffold0634 (2 HSPs)
scaffold0634 (49-450)||(2747-3147)
scaffold0634 (29-65)||(3181-3217)
[»] chr2 (19 HSPs)
chr2 (1-450)||(26582856-26583309)
chr2 (112-450)||(23168954-23169294)
chr2 (112-450)||(23580211-23580551)
chr2 (1-152)||(5706617-5706768)
chr2 (1-339)||(23062869-23063206)
chr2 (44-167)||(29281353-29281475)
chr2 (13-175)||(25181446-25181606)
chr2 (7-146)||(23878326-23878465)
chr2 (13-151)||(9949-10086)
chr2 (29-241)||(26884489-26884701)
chr2 (49-224)||(23089604-23089779)
chr2 (49-224)||(23102032-23102207)
chr2 (49-155)||(21907746-21907852)
chr2 (81-224)||(24660876-24661019)
chr2 (81-175)||(27208324-27208417)
chr2 (81-175)||(27210659-27210752)
chr2 (1-53)||(23264551-23264603)
chr2 (251-339)||(23264301-23264388)
chr2 (90-123)||(23101892-23101925)
[»] chr6 (29 HSPs)
chr6 (1-450)||(29614742-29615195)
chr6 (1-189)||(12167637-12167825)
chr6 (1-189)||(19286546-19286734)
chr6 (1-189)||(19877730-19877918)
chr6 (1-189)||(19883506-19883694)
chr6 (1-189)||(19786462-19786650)
chr6 (1-152)||(34640582-34640733)
chr6 (1-152)||(34647256-34647407)
chr6 (1-154)||(25470297-25470451)
chr6 (1-129)||(21365072-21365200)
chr6 (1-129)||(23969054-23969182)
chr6 (49-365)||(25396343-25396658)
chr6 (49-155)||(18799818-18799924)
chr6 (13-151)||(20008493-20008630)
chr6 (49-224)||(21565761-21565936)
chr6 (24-216)||(19471891-19472082)
chr6 (90-241)||(19300359-19300509)
chr6 (333-449)||(19786751-19786866)
chr6 (333-449)||(12167420-12167535)
chr6 (333-449)||(19877513-19877628)
chr6 (333-449)||(19883289-19883404)
chr6 (333-449)||(19286329-19286444)
chr6 (29-167)||(29097221-29097359)
chr6 (90-167)||(9099694-9099770)
chr6 (90-175)||(11289294-11289378)
chr6 (1-53)||(24513377-24513429)
chr6 (49-104)||(24513414-24513469)
chr6 (29-66)||(31251879-31251916)
chr6 (111-174)||(9186841-9186903)
[»] chr3 (22 HSPs)
chr3 (1-449)||(41455691-41456142)
chr3 (17-446)||(18914193-18914620)
chr3 (1-141)||(24192274-24192414)
chr3 (30-167)||(14865201-14865338)
chr3 (49-155)||(16802037-16802143)
chr3 (51-152)||(55499698-55499799)
chr3 (55-242)||(13324376-13324562)
chr3 (324-381)||(18136117-18136174)
chr3 (1-107)||(17241095-17241201)
chr3 (13-106)||(17131147-17131240)
chr3 (111-242)||(13302844-13302974)
chr3 (111-242)||(13313520-13313650)
chr3 (1-173)||(10415129-10415301)
chr3 (1-173)||(10421799-10421971)
chr3 (49-106)||(12034015-12034072)
chr3 (29-167)||(19235629-19235767)
chr3 (328-381)||(18129607-18129660)
chr3 (1-64)||(10390040-10390104)
chr3 (390-446)||(18136249-18136306)
chr3 (272-376)||(9533232-9533335)
chr3 (111-175)||(12034057-12034119)
chr3 (391-446)||(18129736-18129792)
[»] chr7 (34 HSPs)
chr7 (1-450)||(13123510-13123967)
chr7 (12-314)||(13742860-13743158)
chr7 (4-450)||(12710442-12710896)
chr7 (1-189)||(13006706-13006894)
chr7 (1-152)||(12591237-12591389)
chr7 (1-129)||(3857958-3858087)
chr7 (13-151)||(2464736-2464874)
chr7 (13-167)||(16090442-16090595)
chr7 (1-339)||(13678649-13678985)
chr7 (13-167)||(29181654-29181807)
chr7 (49-224)||(16676623-16676798)
chr7 (49-224)||(17650859-17651034)
chr7 (13-125)||(20311597-20311709)
chr7 (19-318)||(46625166-46625464)
chr7 (49-155)||(11389918-11390024)
chr7 (333-450)||(13742686-13742803)
chr7 (59-174)||(11383440-11383554)
chr7 (29-152)||(14320192-14320316)
chr7 (13-106)||(2966383-2966476)
chr7 (333-449)||(13006489-13006604)
chr7 (13-106)||(20906993-20907086)
chr7 (285-376)||(18607248-18607339)
chr7 (49-174)||(21231567-21231690)
chr7 (272-376)||(147453-147556)
chr7 (17-64)||(13678982-13679030)
chr7 (1-45)||(16676791-16676835)
chr7 (1-45)||(17651027-17651071)
chr7 (322-376)||(16475929-16475983)
chr7 (3-53)||(21231532-21231582)
chr7 (28-64)||(13664450-13664487)
chr7 (90-123)||(46625551-46625584)
chr7 (337-381)||(13318007-13318051)
chr7 (111-175)||(20907071-20907133)
chr7 (90-174)||(31154742-31154825)
[»] chr4 (14 HSPs)
chr4 (1-450)||(8046427-8046893)
chr4 (1-152)||(53483013-53483164)
chr4 (13-167)||(16147376-16147529)
chr4 (13-175)||(11847453-11847614)
chr4 (19-172)||(15244566-15244719)
chr4 (49-141)||(14486052-14486144)
chr4 (1-174)||(15407438-15407598)
chr4 (19-172)||(13887138-13887289)
chr4 (19-172)||(13887995-13888146)
chr4 (324-381)||(14555881-14555938)
chr4 (23-172)||(15307471-15307620)
chr4 (179-242)||(14485975-14486037)
chr4 (92-175)||(27905613-27905695)
chr4 (272-373)||(18212523-18212623)
[»] chr8 (14 HSPs)
chr8 (2-450)||(23865615-23866073)
chr8 (13-175)||(24321216-24321376)
chr8 (1-104)||(17053949-17054053)
chr8 (333-450)||(19902808-19902924)
chr8 (49-339)||(18613409-18613695)
chr8 (1-174)||(25111338-25111498)
chr8 (49-125)||(14057195-14057271)
chr8 (324-379)||(19987990-19988045)
chr8 (3-47)||(14057160-14057204)
chr8 (81-224)||(21931018-21931161)
chr8 (325-375)||(20005423-20005473)
chr8 (397-446)||(20005563-20005612)
chr8 (358-449)||(17053780-17053870)
chr8 (81-125)||(21839821-21839865)
[»] scaffold0117 (1 HSPs)
scaffold0117 (1-450)||(9171-9628)
[»] scaffold1773 (2 HSPs)
scaffold1773 (1-318)||(324-640)
scaffold1773 (333-450)||(153-269)
[»] scaffold0029 (3 HSPs)
scaffold0029 (1-450)||(110939-111374)
scaffold0029 (13-142)||(91747-91876)
scaffold0029 (13-142)||(97473-97602)
[»] chr5 (21 HSPs)
chr5 (1-449)||(23527632-23528092)
chr5 (1-129)||(28889930-28890058)
chr5 (1-129)||(28896634-28896762)
chr5 (1-129)||(28909882-28910010)
chr5 (1-129)||(28931574-28931702)
chr5 (1-129)||(28946277-28946405)
chr5 (13-175)||(19236250-19236410)
chr5 (13-175)||(22460506-22460666)
chr5 (13-175)||(22467130-22467290)
chr5 (17-174)||(18408491-18408647)
chr5 (29-175)||(34829432-34829578)
chr5 (1-129)||(28933075-28933205)
chr5 (324-381)||(22232436-22232493)
chr5 (29-167)||(20781102-20781240)
chr5 (29-167)||(20772327-20772465)
chr5 (29-167)||(24930489-24930627)
chr5 (52-101)||(22439321-22439370)
chr5 (1-64)||(20819618-20819682)
chr5 (1-64)||(20826718-20826782)
chr5 (272-339)||(23112480-23112546)
chr5 (390-446)||(22232568-22232625)
[»] scaffold0456 (4 HSPs)
scaffold0456 (1-278)||(241-497)
scaffold0456 (1-278)||(7386-7642)
scaffold0456 (91-124)||(627-660)
scaffold0456 (91-124)||(7772-7805)
[»] scaffold0025 (1 HSPs)
scaffold0025 (1-141)||(14981-15121)
[»] chr1 (15 HSPs)
chr1 (1-189)||(41111214-41111402)
chr1 (13-175)||(21705625-21705785)
chr1 (13-175)||(21710167-21710328)
chr1 (13-175)||(20851678-20851838)
chr1 (13-151)||(20858305-20858442)
chr1 (28-241)||(19961472-19961684)
chr1 (49-174)||(18712098-18712223)
chr1 (324-381)||(20941657-20941714)
chr1 (333-449)||(41110997-41111112)
chr1 (19-224)||(22030298-22030504)
chr1 (111-339)||(11157328-11157554)
chr1 (272-376)||(20438224-20438327)
chr1 (391-446)||(23631145-23631200)
chr1 (390-446)||(20941789-20941846)
chr1 (91-123)||(20045382-20045414)
[»] scaffold0053 (2 HSPs)
scaffold0053 (18-337)||(81764-82082)
scaffold0053 (13-167)||(80036-80189)
[»] scaffold0154 (1 HSPs)
scaffold0154 (49-229)||(30194-30374)
[»] scaffold0249 (2 HSPs)
scaffold0249 (230-381)||(7517-7667)
scaffold0249 (390-446)||(7742-7798)
[»] scaffold0085 (1 HSPs)
scaffold0085 (13-175)||(4217-4377)
[»] scaffold0028 (3 HSPs)
scaffold0028 (51-364)||(65265-65577)
scaffold0028 (19-124)||(1467-1572)
scaffold0028 (256-318)||(1274-1336)
[»] scaffold0317 (2 HSPs)
scaffold0317 (1-339)||(542-878)
scaffold0317 (17-64)||(875-923)
[»] scaffold0247 (1 HSPs)
scaffold0247 (1-155)||(10679-10822)
[»] scaffold0004 (3 HSPs)
scaffold0004 (81-339)||(116052-116308)
scaffold0004 (49-224)||(129217-129393)
scaffold0004 (12-53)||(116325-116366)
[»] scaffold0924 (1 HSPs)
scaffold0924 (1-100)||(1347-1446)
[»] scaffold0138 (1 HSPs)
scaffold0138 (19-224)||(1117-1322)
[»] scaffold0222 (1 HSPs)
scaffold0222 (1-174)||(16121-16293)
[»] scaffold0001 (3 HSPs)
scaffold0001 (29-241)||(493588-493800)
scaffold0001 (333-450)||(174440-174557)
scaffold0001 (81-224)||(525062-525204)
[»] scaffold0476 (1 HSPs)
scaffold0476 (30-152)||(3854-3976)
[»] scaffold0232 (1 HSPs)
scaffold0232 (19-224)||(18961-19166)
[»] scaffold0090 (1 HSPs)
scaffold0090 (29-193)||(17497-17661)
[»] scaffold0023 (1 HSPs)
scaffold0023 (13-106)||(134867-134960)
[»] scaffold0310 (1 HSPs)
scaffold0310 (49-173)||(6861-6983)
[»] scaffold0461 (2 HSPs)
scaffold0461 (1-174)||(591-752)
scaffold0461 (90-174)||(7605-7688)
[»] scaffold0453 (1 HSPs)
scaffold0453 (29-175)||(11112-11258)
[»] scaffold0031 (2 HSPs)
scaffold0031 (19-224)||(121200-121406)
scaffold0031 (19-224)||(132077-132283)
[»] scaffold0139 (2 HSPs)
scaffold0139 (84-339)||(15604-15856)
scaffold0139 (1-55)||(15532-15586)
[»] scaffold0483 (1 HSPs)
scaffold0483 (28-241)||(11569-11782)
[»] scaffold0261 (2 HSPs)
scaffold0261 (29-241)||(24131-24342)
scaffold0261 (29-65)||(24070-24106)
[»] scaffold0077 (3 HSPs)
scaffold0077 (49-139)||(4191-4281)
scaffold0077 (329-381)||(17972-18024)
scaffold0077 (329-381)||(23605-23657)
[»] scaffold0124 (1 HSPs)
scaffold0124 (49-155)||(34908-35014)
[»] scaffold1061 (1 HSPs)
scaffold1061 (107-318)||(1607-1817)
[»] scaffold0348 (2 HSPs)
scaffold0348 (324-381)||(1527-1584)
scaffold0348 (390-446)||(1659-1716)
[»] scaffold0020 (1 HSPs)
scaffold0020 (49-339)||(102499-102787)
[»] scaffold0094 (1 HSPs)
scaffold0094 (19-216)||(51552-51749)
[»] scaffold0235 (3 HSPs)
scaffold0235 (49-155)||(23226-23332)
scaffold0235 (49-174)||(15509-15633)
scaffold0235 (4-53)||(15475-15524)
[»] scaffold0107 (1 HSPs)
scaffold0107 (49-174)||(41160-41283)
[»] scaffold0034 (1 HSPs)
scaffold0034 (57-175)||(72631-72748)
[»] scaffold0720 (1 HSPs)
scaffold0720 (90-175)||(3882-3966)
[»] scaffold0206 (1 HSPs)
scaffold0206 (90-167)||(18045-18121)
[»] scaffold0337 (1 HSPs)
scaffold0337 (272-376)||(9950-10053)
[»] scaffold2054 (1 HSPs)
scaffold2054 (90-228)||(14-152)
[»] scaffold0006 (1 HSPs)
scaffold0006 (1-47)||(49595-49641)
[»] scaffold1427 (1 HSPs)
scaffold1427 (272-339)||(1207-1273)
[»] scaffold0106 (2 HSPs)
scaffold0106 (384-446)||(46685-46748)
scaffold0106 (384-446)||(50958-51021)
[»] scaffold0169 (1 HSPs)
scaffold0169 (180-224)||(6299-6343)


Alignment Details
Target: scaffold0026 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Original strand, 12444 - 12872
Alignment:
Q  1 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  12444 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcg------ 12537  T
Q  101 cgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggggacttcttgagcattctaaaatatttcc 200  Q
                  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12538 --------------cttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggggacttcttgagcattctaaaatatttcc 12623  T
Q  201 tttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatg 300  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |    
T  12624 tttaacttgtatatcccttgtataggtatcagaatcctactagaacaagccggtgatcgaattggttgatgttagtgaattttggagatgattgagtaag 12723  T
Q  301 aaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaa 400  Q
    ||||||||||||| |||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  12724 aaatcaagtgaatgtataa-ctattgaatgaaattgatgtatgcgcataattataattaattgtgtatgttctggattgttagaactctcggagtagtaa 12822  T
Q  401 gtcatatgaaatatatgtgtagttaagttgtatgtagatatacacaggtt 450  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  12823 gtcatatgagatatatgtgtagttgagttgtatgtagatatacacaggtt 12872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 49 - 450
Target Start/End: Complemental strand, 3147 - 2747
Alignment:
Q  49 agcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttct 148  Q
    ||||||| || |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3147 agcgaactgtgagcgagcgaaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttct 3048  T
Q  149 gaacttttgcttcgtgcacgaggggacttcttgagcattctaaaatatttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaa 248  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  3047 gaacttttgcttcgtgcacgaggggacttcttgagcattctaaaatatttcctttaacttgtataacccttgtataggtaccagaatcccactagaacaa 2948  T
Q  249 gctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcat 348  Q
    || ||||||||||||||||||||||||||||| || ||||||||||||| |||||||| |||||||||||| |||||||||||| |||||||||| ||||    
T  2947 gccggtgatcgaattggttgatgttagtgaatattggagatgattgagtttgaaatcatgtgaatatataa-ttattgaatgaatttgatgtatgcgcat 2849  T
Q  349 aattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgtatgtagatatacacag 447  Q
    |||||||| ||||||| |||||||||||||||| | | || |||||||||||||||||||||| ||||||  ||||| ||||||||||||||||||||||    
T  2848 aattataaataattgtctatgttctggattgtttg-agttgcggagtagtaagtcatatgaaacatatgtattagttgagttgtatgtagatatacacag 2750  T
Q  448 gtt 450  Q
    |||    
T  2749 gtt 2747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 3217 - 3181
Alignment:
Q  29 gttcgctcaagcgaaccgtgagcgaaccgtaagcgag 65  Q
    ||||||| |||||||||||||||||||||||||||||    
T  3217 gttcgcttaagcgaaccgtgagcgaaccgtaagcgag 3181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 270; Significance: 1e-150; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 1 - 450
Target Start/End: Complemental strand, 26583309 - 26582856
Alignment:
Q  1 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  26583309 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgacccgtaagcgagctgaacccagacctactgtaagccggtcgcttaag 26583210  T
Q  101 cgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggggacttcttgagcattctaaaatatttcc 200  Q
    |||||||||||||||||||||||||| || ||||||||||||  ||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||     
T  26583209 cgaactagccgtcgcttaagcgaagtaagtcttagtcagccttcttctgaacttttgtttcgtgcaggaggggacttcttgagcattctataatatttct 26583110  T
Q  201 tttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatg 300  Q
    ||||||| |||||||||| || |||||| | || ||||| |||||| ||| ||||||||||||| ||| ||||||| ||| || ||||||||||||||||    
T  26583109 tttaactagtataaccctggtgtaggtaaccgactcctattagaactagccggtgatcgaattgattggtgttagtaaatgttggagatgattgagtatg 26583010  T
Q  301 aaatcaagtgaatat----ataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagta 396  Q
    ||||| |||||||||    ||||  | | |||||  ||||||||||| |||||||||||| |||||||||||||||||||||||| | | || |||||||    
T  26583009 aaatcgagtgaatatatacataacatgtggaatgtgattgatgtatgcgcataattataaataattgtgtatgttctggattgtttg-agttgcggagta 26582911  T
Q  397 gtaagtcatatgaaatatatgt-gtagttaagttgtatgtagatatacacaggtt 450  Q
    ||||||||||| ||| ||||||  |||||||||||||||||||||||||||||||    
T  26582910 gtaagtcatataaaacatatgtaatagttaagttgtatgtagatatacacaggtt 26582856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 112 - 450
Target Start/End: Original strand, 23168954 - 23169294
Alignment:
Q  112 tcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggggact-tcttgagcattctaaaatatttcctttaacttgt 210  Q
    ||||||||||||  |||| |||||||||||||||||||||  || | |||||| || |||||||  | ||| | |||||||||| |||| || |||||||    
T  23168954 tcgcttaagcgagctgaggcttagtcagcctctttctgaaaatt-gtttcgtgtactaggggacccttttgggtattctaaaatgtttctttcaacttgt 23169052  T
Q  211 ataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtg 310  Q
    ||||||||||||||||||| || ||||||||||||||  |||||||||| |||||||||||||| |||||||| |||||| ||||||||||||||| |||    
T  23169053 ataacccttgtataggtattaggatcctactagaacactctggtgatcgcattggttgatgttaatgaattttggagatgtttgagtatgaaatcatgtg 23169152  T
Q  311 aat--atataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatg 408  Q
    |||  ||||||  | | |||||  | ||||||||| |||||||||||| | ||||||||||| |||||||||| | | || ||||||||||||| |||||    
T  23169153 aatgtatataacatgtggaatgtgaatgatgtatgcgcataattataaatgattgtgtatgtgctggattgtttg-agttgcggagtagtaagttatatg 23169251  T
Q  409 aaatatatgt-gtagttaagttgtatgtagatatacacaggtt 450  Q
    ||||||||||  ||||  |||||||||| ||||||||| ||||    
T  23169252 aaatatatgtattagtggagttgtatgtggatatacacgggtt 23169294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 112 - 450
Target Start/End: Original strand, 23580211 - 23580551
Alignment:
Q  112 tcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggggact-tcttgagcattctaaaatatttcctttaacttgt 210  Q
    ||||||||||||  |||| |||||||||||||||||||||  || | |||||| || |||||||  | ||| | |||||||||| |||| || |||||||    
T  23580211 tcgcttaagcgagctgaggcttagtcagcctctttctgaaaatt-gtttcgtgtactaggggacccttttgggtattctaaaatgtttctttcaacttgt 23580309  T
Q  211 ataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtg 310  Q
    ||||||||||||||||||| || ||||||||||||||  |||||||||| |||||||||||||| |||||||| |||||| ||||||||||||||| |||    
T  23580310 ataacccttgtataggtattaggatcctactagaacactctggtgatcgcattggttgatgttaatgaattttggagatgtttgagtatgaaatcatgtg 23580409  T
Q  311 aat--atataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatg 408  Q
    |||  ||||||  | | |||||  | ||||||||| |||||||||||| | ||||||||||| |||||||||| | | || ||||||||||||| |||||    
T  23580410 aatgtatataacatgtggaatgtgaatgatgtatgcgcataattataaatgattgtgtatgtgctggattgtttg-agttgcggagtagtaagttatatg 23580508  T
Q  409 aaatatatgt-gtagttaagttgtatgtagatatacacaggtt 450  Q
    ||||||||||  ||||  |||||||||| ||||||||| ||||    
T  23580509 aaatatatgtattagtggagttgtatgtggatatacacgggtt 23580551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 5706617 - 5706768
Alignment:
Q  1 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccaga-cctactgtaagccggtcgcttaa 99  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||| |||| |||||| |||||||||||| ||||||||||    
T  5706617 gcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgagcccagagcctactgtaagctggtcgcttaa 5706716  T
Q  100 gcgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttctgaac 152  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  5706717 gcgaactagccgtcgcttaagcgaagtgaaccttagtcagcct-tttctgaac 5706768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 23063206 - 23062869
Alignment:
Q  1 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaag 100  Q
    |||||||| |||||  ||||||||||||||||||| ||||||||||  |||||  ||| ||||||   |||||  ||   ||||||||||||||||||||    
T  23063206 gcgaaaaatcatttgcattctgtcagaagttcgcttaagcgaaccgcaagcgaggcgttagcgagtgaaaccccaactctctgtaagccggtcgcttaag 23063107  T
Q  101 cgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgagggga-cttcttgagcattctaaaatatttc 199  Q
    ||||| ||||||||||||||||||||   |||||||||||| |||| ||||| ||||| |||||||  |||||| | | |||||||||  ||||| ||||    
T  23063106 cgaaccagccgtcgcttaagcgaagttgaccttagtcagccactttttgaac-tttgcctcgtgcattaggggatccttttgagcatttaaaaatgtttc 23063008  T
Q  200 ctttaacttgtataacccttgtataggtatcagaatcctact-agaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagta 298  Q
     || |||||||||||||||| ||||   | | |||||||||| | ||||   |||| |||||||| |||||  |||||||| ||| ||||||||||||||    
T  23063007 tttcaacttgtataacccttatatataca-ctgaatcctactgaaaacactttggtaatcgaattagttgagtttagtgaa-tttggagatgattgagta 23062910  T
Q  299 tgaaatcaagtgaatatataatttattgaatgaaattgatg 339  Q
    ||||| | |||||| ||||| | | ||||||||| ||||||    
T  23062909 tgaaacctagtgaacatatactatgttgaatgaacttgatg 23062869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 44 - 167
Target Start/End: Complemental strand, 29281475 - 29281353
Alignment:
Q  44 ccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtgagccttagtcagcctc 143  Q
    |||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||  |||||||||||     
T  29281475 ccgtgagcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagtcagcctt 29281376  T
Q  144 tttctgaacttttgcttcgtgcac 167  Q
    |||||||||  |||||||||||||    
T  29281375 tttctgaac-cttgcttcgtgcac 29281353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 13 - 175
Target Start/End: Original strand, 25181446 - 25181606
Alignment:
Q  13 tttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgt 112  Q
    |||||||||| ||  | |||||| |||||| |||||||||| ||||||| || ||||||||||||||||||||||| |||||||||||| ||||||||||    
T  25181446 tttgattctgccaagaattcgcttaagcgagccgtgagcgacccgtaagtgaactgaacccagacctactgtaagctggtcgcttaagcaaactagccgt 25181545  T
Q  113 cgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggggac 175  Q
    |||||||||||| ||||  ||||||||||| |||||||| | ||||||||||||| |||||||    
T  25181546 cgcttaagcgaactgagtgttagtcagcct-tttctgaa-tcttgcttcgtgcactaggggac 25181606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 7 - 146
Target Start/End: Complemental strand, 23878465 - 23878326
Alignment:
Q  7 aaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaact 106  Q
    |||| ||||||||||| ||  | ||||||||||||||| |  |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  23878465 aacctttttgattctgccaagaattcgctcaagcgaactgcaagcgaaccgtaagcgagcagaacccagacttactgtaagccggtcgcttaagcgaact 23878366  T
Q  107 agccgtcgcttaagcgaag-tgagccttagtcagcctcttt 146  Q
    ||||||||||||||||||| ||| |||||||||||| ||||    
T  23878365 agccgtcgcttaagcgaagatga-ccttagtcagccacttt 23878326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 13 - 151
Target Start/End: Complemental strand, 10086 - 9949
Alignment:
Q  13 tttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgt 112  Q
    |||||||||| ||  | |||||| |||||| |||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  10086 tttgattctgccaagaattcgcttaagcgagccgtgagcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgt 9987  T
Q  113 cgcttaagcgaagtgagccttagtcagcctctttctgaa 151  Q
    ||||||||| || ||||  |||| |||||| ||||||||    
T  9986 cgcttaagcaaactgagtgttagacagcct-tttctgaa 9949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 29 - 241
Target Start/End: Complemental strand, 26884701 - 26884489
Alignment:
Q  29 gttcgctcaagcgaaccgtgagcgaaccgtaagcgagct-gaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtg 127  Q
    |||||||||||||||| |||||| |||||| |||||||  |||||   ||||  |||  || |||||||||||||| ||| || ||||||||||||| ||    
T  26884701 gttcgctcaagcgaactgtgagctaaccgtgagcgagcgagaacctcaaccttttgtgtgctggtcgcttaagcgagctacccttcgcttaagcgaactg 26884602  T
Q  128 agccttagtcagcctctttctgaacttttgcttcgtgcacgagggga-cttcttgagcattctaaaatatttcctttaacttgtataacccttgtatagg 226  Q
    |||||||||||||||||||||||||  ||||||||||||| |||||| | | ||||| ||| | |||| |||| |||| |||||||||| ||||||||||    
T  26884601 agccttagtcagcctctttctgaac-cttgcttcgtgcactaggggacccttttgagtatttttaaatgtttcttttagcttgtataactcttgtatagg 26884503  T
Q  227 tatcagaatcctact 241  Q
     |||| |||||||||    
T  26884502 catca-aatcctact 26884489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 49 - 224
Target Start/End: Original strand, 23089604 - 23089779
Alignment:
Q  49 agcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttct 148  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||   |||||||||||| |||| |    
T  23089604 agcgaaccgtaagcgagcagaacccagacttactgtaagccggtcgcttaagcgaactggacgtcgcttaagcgaagttgaccttagtcagccacttttt 23089703  T
Q  149 gaacttttgcttcgtgcacgaggggacttc-ttgagcattctaaaatatttcctttaacttgtataacccttgtata 224  Q
    ||||  |||| |||||||  ||| |||  | |||||||||  || ||  |||||| |||||||||||||||| ||||    
T  23089704 gaac-gttgcctcgtgcattaggagacccctttgagcattgaaacatggttccttcaacttgtataacccttatata 23089779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 49 - 224
Target Start/End: Original strand, 23102032 - 23102207
Alignment:
Q  49 agcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttct 148  Q
    |||||||||||||||||| |||||||||| |||||||||||| || |||||||||||| | |||||||||||||||||   |||||||||||| |||| |    
T  23102032 agcgaaccgtaagcgagcagaacccagacttactgtaagccgatcacttaagcgaactggacgtcgcttaagcgaagttgaccttagtcagccacttttt 23102131  T
Q  149 gaacttttgcttcgtgcacgaggggacttc-ttgagcattctaaaatatttcctttaacttgtataacccttgtata 224  Q
    ||||  |||| |||||||  ||| |||  | |||||||||  || ||  |||||| |||||||||||||||| ||||    
T  23102132 gaac-gttgcctcgtgcattaggagacccctttgagcattgaaacatggttccttcaacttgtataacccttatata 23102207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 49 - 155
Target Start/End: Complemental strand, 21907852 - 21907746
Alignment:
Q  49 agcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaag-tgagccttagtcagcctctttc 147  Q
    |||||||||| ||||||| ||||||  || | |||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||| ||||     
T  21907852 agcgaaccgttagcgagcggaaccccaactttctgtaagccggtcgcttaagcgaactagccatcgcttaagcgaagatga-ccttagtcagccactttt 21907754  T
Q  148 tgaacttt 155  Q
    ||||||||    
T  21907753 tgaacttt 21907746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 81 - 224
Target Start/End: Complemental strand, 24661019 - 24660876
Alignment:
Q  81 ctgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgagggga-cttct 179  Q
    |||| |||||||||||||||||| | ||||||||||||||| |||   | ||||||||||| |||| |||| |||| |||||||||| |||||| | | |    
T  24661019 ctgtgagccggtcgcttaagcgagccagccgtcgcttaagcaaagaaggtcttagtcagccactttttgaa-ttttacttcgtgcactaggggatccttt 24660921  T
Q  180 tgagcattctaaaatatttcctttaacttgtataacccttgtata 224  Q
    |||||||| |||||| |||| || ||||||||||||| |||||||    
T  24660920 tgagcattttaaaatgtttctttcaacttgtataacctttgtata 24660876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 81 - 175
Target Start/End: Original strand, 27208324 - 27208417
Alignment:
Q  81 ctgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggggac 175  Q
    |||| ||| |||||||||||||| ||| || ||||||||||||| ||||||||||||||||| |||||||||  ||| ||||||||| |||||||    
T  27208324 ctgtgagctggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcagcctttttctgaac-cttgtttcgtgcactaggggac 27208417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 81 - 175
Target Start/End: Original strand, 27210659 - 27210752
Alignment:
Q  81 ctgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggggac 175  Q
    |||| ||| |||||||||||||| ||| || ||||||||||||| ||||||||||||||||| |||||||||  ||| ||||||||| |||||||    
T  27210659 ctgtgagctggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcagcctttttctgaac-cttgtttcgtgcactaggggac 27210752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 23264603 - 23264551
Alignment:
Q  1 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcga 53  Q
    |||||||| |||||| ||| ||||||||||||||||||||||||||| |||||    
T  23264603 gcgaaaaatcattttcattatgtcagaagttcgctcaagcgaaccgttagcga 23264551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 339
Target Start/End: Complemental strand, 23264388 - 23264301
Alignment:
Q  251 tggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 339  Q
    |||| |||||||| |||||  |||||||| ||| |||||||| |||||||||| |||||||| ||||| | | ||||||||| ||||||    
T  23264388 tggtaatcgaattagttgagtttagtgaa-tttggagatgatcgagtatgaaaccaagtgaacatatactatgttgaatgaacttgatg 23264301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 123
Target Start/End: Original strand, 23101892 - 23101925
Alignment:
Q  90 ggtcgcttaagcgaactagccgtcgcttaagcga 123  Q
    |||||||||||||||| |||||||||||||||||    
T  23101892 ggtcgcttaagcgaaccagccgtcgcttaagcga 23101925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 450
Target Start/End: Original strand, 29614742 - 29615195
Alignment:
Q  1 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||    
T  29614742 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaacccgtaagcgagctgaacccagacctactgtaagtcggtcgcttaag 29614841  T
Q  101 cgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggggacttcttgagcattctaaaatatttcc 200  Q
    |||||||||||||||||||||||||||||||||||||||||   ||||||||||||| |||||||| ||||| ||||||||||||||||| |||||||||    
T  29614842 cgaactagccgtcgcttaagcgaagtgagccttagtcagcc---ttctgaacttttgtttcgtgcatgagggaacttcttgagcattctataatatttcc 29614938  T
Q  201 tttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatg 300  Q
    ||||||| |||||||||| | ||||||| ||||||| || |||||| ||| |||||| |||||| ||| ||||||| ||| || ||||||||||||||||    
T  29614939 tttaactagtataaccctggcataggtaacagaatcttattagaacgagccggtgattgaattgattggtgttagtaaatgttggagatgattgagtatg 29615038  T
Q  301 aaatcaagtga--------atatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcgg 392  Q
    ||| |||||||        ||||||||  | | |||||  ||||||||||||| |||||||||| ||||||||||||||||||||||||   | || |||    
T  29615039 aaaacaagtgaatatgtgtatatataacatgtggaatgtgattgatgtatgtgaataattataaataattgtgtatgttctggattgtt--gagttgcgg 29615136  T
Q  393 agtagtaagtcatatgaaatatatgt-gtagttaagttgtatgtagatatacacaggtt 450  Q
    || |||||||||||||||| ||||||  ||||  |||||||||||||||||||||||||    
T  29615137 agcagtaagtcatatgaaacatatgtaatagtcgagttgtatgtagatatacacaggtt 29615195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 12167825 - 12167637
Alignment:
Q  1 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccag-acctactgtaagccggtcgcttaa 99  Q
    ||||||||||||||| ||||||||  ||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||| ||||||||||    
T  12167825 gcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggtcgcttaa 12167726  T
Q  100 gcgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggggacttcttgagcattct 189  Q
    ||||||||||||||||||||||||||||| ||||| ||||||| |||||||||| |||||| ||||| ||||||||||||||||| ||||    
T  12167725 gcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttagtgcatgaggggacttcttgagcgttct 12167637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 19286734 - 19286546
Alignment:
Q  1 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccag-acctactgtaagccggtcgcttaa 99  Q
    ||||||||||||||| ||||||||  ||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||| ||||||||||    
T  19286734 gcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggtcgcttaa 19286635  T
Q  100 gcgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggggacttcttgagcattct 189  Q
    ||||||||||||||||||||||||||||| ||||| ||||||| |||||||||| |||||| ||||| ||||||||||||||||| ||||    
T  19286634 gcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttagtgcatgaggggacttcttgagcgttct 19286546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 19877918 - 19877730
Alignment:
Q  1 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccag-acctactgtaagccggtcgcttaa 99  Q
    ||||||||||||||| ||||||||  ||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||| ||||||||||    
T  19877918 gcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggtcgcttaa 19877819  T
Q  100 gcgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggggacttcttgagcattct 189  Q
    ||||||||||||||||||||||||||||| ||||| ||||||| |||||||||| |||||| ||||| ||||||||||||||||| ||||    
T  19877818 gcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttagtgcatgaggggacttcttgagcgttct 19877730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 19883694 - 19883506
Alignment:
Q  1 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccag-acctactgtaagccggtcgcttaa 99  Q
    ||||||||||||||| ||||||||  ||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||| ||||||||||    
T  19883694 gcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggtcgcttaa 19883595  T
Q  100 gcgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggggacttcttgagcattct 189  Q
    ||||||||||||||||||||||||||||| ||||| | ||||| |||||||||| |||||| ||||| ||||||||||||||||| ||||    
T  19883594 gcgaactagccgtcgcttaagcgaagtgaaccttaattagcct-tttctgaactgttgcttagtgcatgaggggacttcttgagcgttct 19883506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 19786462 - 19786650
Alignment:
Q  1 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccaga-cctactgtaagccggtcgcttaa 99  Q
    ||||||||||||||| ||||||||  ||||||||||||||||||||||||||| ||||||||||  |||||||||| |||||||||||| ||||||||||    
T  19786462 gcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaagtgaacccagaacctactgtaagctggtcgcttaa 19786561  T
Q  100 gcgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggggacttcttgagcattct 189  Q
    ||||||||||||||||||||||||||||| ||||| ||||||| |||||||||| ||||||  |||| ||||||||||||||||| ||||    
T  19786562 gcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttaatgcatgaggggacttcttgagcgttct 19786650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 34640582 - 34640733
Alignment:
Q  1 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccaga-cctactgtaagccggtcgcttaa 99  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||| |||| |||||| |||||||||||| ||||||||||    
T  34640582 gcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgagcccagagcctactgtaagctggtcgcttaa 34640681  T
Q  100 gcgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttctgaac 152  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  34640682 gcgaactagccgtcgcttaagcgaagtgaaccttagtcagcct-tttctgaac 34640733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 34647256 - 34647407
Alignment:
Q  1 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccaga-cctactgtaagccggtcgcttaa 99  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||| |||| |||||| |||||||||||| ||||||||||    
T  34647256 gcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgagcccagagcctactgtaagctggtcgcttaa 34647355  T
Q  100 gcgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttctgaac 152  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  34647356 gcgaactagccgtcgcttaagcgaagtgaaccttagtcagcct-tttctgaac 34647407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 25470297 - 25470451
Alignment:
Q  1 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccaga-cctactgtaagccggtcgcttaa 99  Q
    ||||||||||||||||||||||||  || |||||||||||||||||||||||| |||||||||| |||| |||||| |||||||||||  ||||||||||    
T  25470297 gcgaaaaaccattttgattctgtccaaaattcgctcaagcgaaccgtgagcgacccgtaagcgaactgagcccagaacctactgtaagttggtcgcttaa 25470396  T
Q  100 gcgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttctgaactt 154  Q
    ||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||    
T  25470397 gcgaactagacgtcgcttaagcgaagtgaaccttagtcagcctttttctgaactt 25470451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 21365072 - 21365200
Alignment:
Q  1 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaag 100  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||  |||||||||||    
T  21365072 gcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaag 21365171  T
Q  101 cgaactagccgtcgcttaagcgaagtgag 129  Q
    ||| |||||||||||||||||||| ||||    
T  21365172 cgagctagccgtcgcttaagcgaactgag 21365200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 23969054 - 23969182
Alignment:
Q  1 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaag 100  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||  |||||||||||    
T  23969054 gcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaag 23969153  T
Q  101 cgaactagccgtcgcttaagcgaagtgag 129  Q
    ||| |||||||||||||||||||| ||||    
T  23969154 cgagctagccgtcgcttaagcgaactgag 23969182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 49 - 365
Target Start/End: Complemental strand, 25396658 - 25396343
Alignment:
Q  49 agcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttct 148  Q
    |||||||||| ||||||| ||||||  ||   ||||||| ||||||||||||||| | ||||||||||||||||||||  | |||||||| || |||| |    
T  25396658 agcgaaccgttagcgagcggaaccccaactctctgtaagtcggtcgcttaagcgagccagccgtcgcttaagcgaagtaggtcttagtcaaccacttttt 25396559  T
Q  149 gaacttttgcttcgtgcacgagggga-cttcttgagcattctaaaatatttcctttaacttgtataacccttgtataggtatcagaatcctactagaaca 247  Q
    ||| || ||||| |||||| |||| | | | |||||||||||||||| |||| || ||||||||||||||||||||| | | | ||||||||||  ||||    
T  25396558 gaa-ttatgcttagtgcactagggaatccttttgagcattctaaaatgtttctttcaacttgtataacccttgtatatgca-ctgaatcctactgaaaca 25396461  T
Q  248 agctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgca 347  Q
       |||| ||||||||||||||  |||||||||||| || |||||||||||||||| |||||||||||||| |   ||||||||| |||||| ||  | |    
T  25396460 cattggtaatcgaattggttgaatttagtgaattttggatatgattgagtatgaaaccaagtgaatatatactaggttgaatgaacttgatgcattagta 25396361  T
Q  348 taattataattaattgtg 365  Q
    | ||||| ||||||||||    
T  25396360 tgattattattaattgtg 25396343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 49 - 155
Target Start/End: Complemental strand, 18799924 - 18799818
Alignment:
Q  49 agcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttct 148  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||| |    
T  18799924 agcgaaccgtaagcgagcggaacccagacttactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtcaaccttagtcagccacttttt 18799825  T
Q  149 gaacttt 155  Q
    |||||||    
T  18799824 gaacttt 18799818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 13 - 151
Target Start/End: Original strand, 20008493 - 20008630
Alignment:
Q  13 tttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgt 112  Q
    |||||||||| ||  | |||||| |||||| |||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  20008493 tttgattctgccaagaattcgcttaagcgagccgtgagcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgt 20008592  T
Q  113 cgcttaagcgaagtgagccttagtcagcctctttctgaa 151  Q
     ||||||||||| ||||  |||| |||||| ||||||||    
T  20008593 tgcttaagcgaactgagtgttagacagcct-tttctgaa 20008630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 49 - 224
Target Start/End: Original strand, 21565761 - 21565936
Alignment:
Q  49 agcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttct 148  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||   |||||||||||| |||| |    
T  21565761 agcgaaccgtaagcgagcagaacccagacttactgtaagccggtcgcttaagcgaactggacgtcgcttaagcgaagttgaccttagtcagccacttttt 21565860  T
Q  149 gaacttttgcttcgtgcacgagggga-cttcttgagcattctaaaatatttcctttaacttgtataacccttgtata 224  Q
    ||||  |||| |||||||  ||| || | | |||||||||  || ||  |||||| |||||||||||||||| ||||    
T  21565861 gaac-gttgcctcgtgcattaggagacccttttgagcattgaaacatggttccttcaacttgtataacccttatata 21565936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 24 - 216
Target Start/End: Original strand, 19471891 - 19472082
Alignment:
Q  24 cagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcga 123  Q
    |||||||||||| ||||||||||  ||||| |||| ||||||| ||||||  || | |||| |||||||||||||||||| | |||| ||||||||||||    
T  19471891 cagaagttcgcttaagcgaaccgcaagcgagccgttagcgagcggaaccccaactttctgtgagccggtcgcttaagcgagccagccatcgcttaagcga 19471990  T
Q  124 agtgagccttagtcagcctctttctgaacttttgcttcgtgcacgagggga-cttcttgagcattctaaaatatttcctttaacttgtataacc 216  Q
    ||   | ||| ||||||| |||| |||| ||||||||||||||| |||||| | | ||||||||| | |||| ||||||| |||||||||||||    
T  19471991 agaaggtctt-gtcagccactttttgaa-ttttgcttcgtgcactaggggatccttttgagcattttgaaatgtttccttcaacttgtataacc 19472082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 90 - 241
Target Start/End: Original strand, 19300359 - 19300509
Alignment:
Q  90 ggtcgcttaagcgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgagggga-cttcttgagcattc 188  Q
    |||||||||||||| ||| || ||||||||||||  ||||||||||||||||||| ||||||| |||||||||||||| |||||| | | ||||| |||     
T  19300359 ggtcgcttaagcgagctacccttcgcttaagcgagatgagccttagtcagcctctatctgaac-tttgcttcgtgcactaggggacccttttgagtattt 19300457  T
Q  189 taaaatatttcctttaacttgtataacccttgtataggtatcagaatcctact 241  Q
    | || | |||| |||| ||||||||||||||||||||| |||| |||||||||    
T  19300458 ttaagtgtttcttttagcttgtataacccttgtataggcatca-aatcctact 19300509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 333 - 449
Target Start/End: Original strand, 19786751 - 19786866
Alignment:
Q  333 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 431  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||| || || | ||||||||||||||||||| | |||||| |||||  ||||||    
T  19786751 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttat-ggagtagtaagtcatatgatacatatgtagtagtcgagttgt 19786848  T
Q  432 atgtagatatacacaggt 449  Q
    ||||||||||||||||||    
T  19786849 atgtagatatacacaggt 19786866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 333 - 449
Target Start/End: Complemental strand, 12167535 - 12167420
Alignment:
Q  333 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 431  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||| || || | ||||||||||||||||||| | |||||| || ||  ||||||    
T  12167535 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttgt-ggagtagtaagtcatatgatacatatgtagtggtcgagttgt 12167438  T
Q  432 atgtagatatacacaggt 449  Q
    ||||||||||||||||||    
T  12167437 atgtagatatacacaggt 12167420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 333 - 449
Target Start/End: Complemental strand, 19877628 - 19877513
Alignment:
Q  333 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 431  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||| || || | ||||||||||||||||||| | |||||| || ||  ||||||    
T  19877628 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttgt-ggagtagtaagtcatatgatacatatgtagtggtcgagttgt 19877531  T
Q  432 atgtagatatacacaggt 449  Q
    ||||||||||||||||||    
T  19877530 atgtagatatacacaggt 19877513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 333 - 449
Target Start/End: Complemental strand, 19883404 - 19883289
Alignment:
Q  333 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 431  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||| || || | ||||||||||||||||||| | |||||| || ||  ||||||    
T  19883404 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttgt-ggagtagtaagtcatatgatacatatgtagtggtcgagttgt 19883307  T
Q  432 atgtagatatacacaggt 449  Q
    ||||||||||||||||||    
T  19883306 atgtagatatacacaggt 19883289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 333 - 449
Target Start/End: Complemental strand, 19286444 - 19286329
Alignment:
Q  333 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 431  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||| || || | ||||||||||||||||| | | |||||| || ||  ||||||    
T  19286444 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttgt-ggagtagtaagtcatattatacatatgtagtggtcgagttgt 19286347  T
Q  432 atgtagatatacacaggt 449  Q
    ||||||||||||||||||    
T  19286346 atgtagatatacacaggt 19286329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 167
Target Start/End: Complemental strand, 29097359 - 29097221
Alignment:
Q  29 gttcgctcaagcgaaccgtgagcgaaccgtaagcgagct-gaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtg 127  Q
    ||||||| |||||||| | ||||||||||| |||||||  | |||   ||||  ||| ||| |||||||||||||| |||  ||||||||||||||| ||    
T  29097359 gttcgcttaagcgaactgcgagcgaaccgtgagcgagcgaggacctcaaccttgtgtgagctggtcgcttaagcgagctactcgtcgcttaagcgaactg 29097260  T
Q  128 agccttagtcagcctctttctgaacttttgcttcgtgcac 167  Q
    ||  ||||||||||  |||||||| |||||||||||||||    
T  29097259 agtgttagtcagcccttttctgaa-ttttgcttcgtgcac 29097221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 90 - 167
Target Start/End: Original strand, 9099694 - 9099770
Alignment:
Q  90 ggtcgcttaagcgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcac 167  Q
    |||||||||||||| |||  ||||||||||||||| ||||  ||||||||||  |||||||| |||||||||||||||    
T  9099694 ggtcgcttaagcgagctactcgtcgcttaagcgaactgagtgttagtcagcccttttctgaa-ttttgcttcgtgcac 9099770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 90 - 175
Target Start/End: Original strand, 11289294 - 11289378
Alignment:
Q  90 ggtcgcttaagcgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggggac 175  Q
    |||||||||||| | ||| || ||||||||||||  |||||||||| ||||| |||||||||| ||||| |||||||| |||||||    
T  11289294 ggtcgcttaagcaagctacccttcgcttaagcgagctgagccttagccagcccctttctgaac-tttgcctcgtgcactaggggac 11289378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 24513377 - 24513429
Alignment:
Q  1 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcga 53  Q
    |||||||| |||||| |||||  |||||||||||||||||||||||| |||||    
T  24513377 gcgaaaaatcattttcattcttccagaagttcgctcaagcgaaccgttagcga 24513429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 24513414 - 24513469
Alignment:
Q  49 agcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaa 104  Q
    |||||||||| ||||||| ||||||| || | |||| |||||||||||||||||||    
T  24513414 agcgaaccgttagcgagcggaacccaaactttctgtgagccggtcgcttaagcgaa 24513469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 66
Target Start/End: Complemental strand, 31251916 - 31251879
Alignment:
Q  29 gttcgctcaagcgaaccgtgagcgaaccgtaagcgagc 66  Q
    |||||||||||||||| ||||||||||||| |||||||    
T  31251916 gttcgctcaagcgaactgtgagcgaaccgtgagcgagc 31251879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 174
Target Start/End: Complemental strand, 9186903 - 9186841
Alignment:
Q  111 gtcgcttaagcgaag-tgagccttagtcagcctctttctgaacttttgcttcgtgcacgagggga 174  Q
    ||||||||||||||| ||| |||||||||||| |||| ||||| |||||||||||||| ||||||    
T  9186903 gtcgcttaagcgaagatga-ccttagtcagccactttttgaac-tttgcttcgtgcactagggga 9186841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 223; Significance: 1e-122; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 1 - 449
Target Start/End: Original strand, 41455691 - 41456142
Alignment:
Q  1 gcgaaaaacca--ttttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccaga-cctactgtaagccggtcgctt 97  Q
    |||||||||||  |||||||||||||  ||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||| ||||||||    
T  41455691 gcgaaaaaccaatttttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggtcgctt 41455790  T
Q  98 aagcgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggggacttcttgagcattctaaaatatt 197  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||| ||||| ||||||||||| ||||| ||||  ||  |     
T  41455791 aagcgaactagccgtcgcttaagcgaagtgaaccttagtcagcctttttctgaactgttgcttagtgcatgaggggacttcctgagcgttctttaacttc 41455890  T
Q  198 tcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagt 297  Q
      ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||  ||||||||| ||| ||||||| ||| || ||||| |||||||    
T  41455891 ctctttaacttgtataatcctagtataggtatcagaatcctactagaacaagctggcaatcgaattgattggtgttagtaaatgttggagataattgagt 41455990  T
Q  298 atgaa-atcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagta 396  Q
    | ||| || ||||||||||| ||  |||||||||||||||||||| | |||||||||||| |||||||| |||||||| |||||| | | || |||||||    
T  41455991 aggaagattaagtgaatatacaa-ctattgaatgaaattgatgtaagcgcataattataaataattgtgaatgttctgaattgtttg-agttacggagta 41456088  T
Q  397 gtaagtcatatgaaatatatg-tgtagttaagttgtatgtagatatacacaggt 449  Q
    ||||||||||||||| |||||   ||||| ||||||||||||||||||||||||    
T  41456089 gtaagtcatatgaaacatatgcattagttgagttgtatgtagatatacacaggt 41456142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 17 - 446
Target Start/End: Complemental strand, 18914620 - 18914193
Alignment:
Q  17 attctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgct 116  Q
    |||||| |||||||||||| ||| ||||||  |||||||| | ||||||| ||||||  ||   || ||||||||||||||||||||||  ||| |||||    
T  18914620 attctgccagaagttcgcttaagtgaaccgcaagcgaacctttagcgagcggaaccccaactctctataagccggtcgcttaagcgaacctgccatcgct 18914521  T
Q  117 taagcgaag-tgagccttagtcagcctctttctgaacttttgcttcgtgcacgagggga-cttcttgagcattctaaaatatttcctttaacttgtataa 214  Q
    ||||||||| ||| |||||||||||| |||| |||| |||||| |||||||  |||||| | | ||||||||   | |||||||| |  |||||||||||    
T  18914520 taagcgaagatga-ccttagtcagccacttt-tgaatttttgcctcgtgcattaggggatccttttgagcatataataatatttcttccaacttgtataa 18914423  T
Q  215 cccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaata 314  Q
    || || ||||   | || |||||||||| ||||  ||  |||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  18914422 cctttatatataca-cataatcctactaaaacactctattgatggaattagttgatgttagtgaattttggagatgattgagtatgaaatcaagtgaata 18914324  T
Q  315 tataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatat 414  Q
    |||| | | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| || |||||| ||||||||||||||| ||    
T  18914323 tatattatgttgaatgaaattgatgtatgagcataattataattaattgtgtatgttctggattgttggaa-ttgcggagttgtaagtcatatgaaacat 18914225  T
Q  415 atgtgtagttaagttgtatgtagatatacaca 446  Q
    |||| | |||||||||||||||||||||||||    
T  18914224 atgtattgttaagttgtatgtagatatacaca 18914193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 24192414 - 24192274
Alignment:
Q  1 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||    
T  24192414 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagtgagttgaacccagacttactgtaagccggtcgcttaag 24192315  T
Q  101 cgaactagccgtcgcttaagcgaagtgagccttagtcagcc 141  Q
    |||||||||||||||||||||||||||  ||||||||||||    
T  24192314 cgaactagccgtcgcttaagcgaagtggaccttagtcagcc 24192274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 30 - 167
Target Start/End: Complemental strand, 14865338 - 14865201
Alignment:
Q  30 ttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccg-tcgcttaagcgaagtga 128  Q
    |||||| |||||| |||||||||| |||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||| |||    
T  14865338 ttcgcttaagcgagccgtgagcgacccgtaagcgaactgaacccagacctactctaagctggtcgcttaagcgaactagccgttcgcttaagcgaactga 14865239  T
Q  129 gccttagtcagcctctttctgaacttttgcttcgtgcac 167  Q
    |  ||||||||||| |||||||||  |||||||||||||    
T  14865238 gtgttagtcagcctttttctgaac-cttgcttcgtgcac 14865201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 49 - 155
Target Start/End: Original strand, 16802037 - 16802143
Alignment:
Q  49 agcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttct 148  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||   ||||||| |||| |||| |    
T  16802037 agcgaaccgtaagcgagcagaacccagacttactgtaagccggtcgcttaagcgagctagccgtcgtttaagcgaagttgaccttagttagccacttttt 16802136  T
Q  149 gaacttt 155  Q
    |||||||    
T  16802137 gaacttt 16802143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 51 - 152
Target Start/End: Original strand, 55499698 - 55499799
Alignment:
Q  51 cgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttctga 150  Q
    |||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||    ||||||||||| |||| |||    
T  55499698 cgaaccgtaagcgagcagaacctagacttactgtaagccggtcgcttaagcgaactagacgtcgcttaagcgaagttgatcttagtcagccactttttga 55499797  T
Q  151 ac 152  Q
    ||    
T  55499798 ac 55499799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 55 - 242
Target Start/End: Original strand, 13324376 - 13324562
Alignment:
Q  55 ccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttctgaactt 154  Q
    |||| |||||||  |||||| || | ||| ||||| ||||||||||||| | |||| ||||||||||||  |||||||||||||||| ||||||||| ||    
T  13324376 ccgtcagcgagcaaaacccaaactttctgcaagccagtcgcttaagcgagccagccttcgcttaagcgagctgagccttagtcagccactttctgaa-tt 13324474  T
Q  155 ttgcttcgtgcacgagggga-cttcttgagcattctaaaatatttcctttaacttgtataacccttgtataggtatcagaatcctacta 242  Q
    ||||||||||||  |||||| | | |||||||||| || || |||| || | ||| ||||||||||||||||||| || ||||||||||    
T  13324475 ttgcttcgtgcattaggggacccttttgagcattcaaagatgtttctttcagcttatataacccttgtataggtaaca-aatcctacta 13324562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 324 - 381
Target Start/End: Original strand, 18136117 - 18136174
Alignment:
Q  324 ttgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 381  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  18136117 ttgaatgaaattgatgtatgagcataattataattaattgtgtatgttctggattgtt 18136174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 17241095 - 17241201
Alignment:
Q  1 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaag 100  Q
    |||||||| || ||| ||||||||||||||||||||||||||||||  |||||||||| ||||||| ||||||  ||   || |||| ||||||||||||    
T  17241095 gcgaaaaatcaatttcattctgtcagaagttcgctcaagcgaaccgcaagcgaaccgtcagcgagcggaaccccaactctctataagtcggtcgcttaag 17241194  T
Q  101 cgaacta 107  Q
    |||||||    
T  17241195 cgaacta 17241201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 17131240 - 17131147
Alignment:
Q  13 tttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaact 106  Q
    |||||||||| ||  | |||||| |||||| || ||||||| |||||||||| ||||||||||||||||||||||| |||| ||||||||||||    
T  17131240 tttgattctgccaagaattcgcttaagcgagccatgagcgacccgtaagcgaactgaacccagacctactgtaagctggtcacttaagcgaact 17131147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 111 - 242
Target Start/End: Original strand, 13302844 - 13302974
Alignment:
Q  111 gtcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgagggga-cttcttgagcattctaaaatatttcctttaacttg 209  Q
    |||||||||||||  |||||||||||||||| ||||||||| ||||||||||||||  |||||| | | |||||||||| || || |||| || | |||     
T  13302844 gtcgcttaagcgagctgagccttagtcagccactttctgaa-ttttgcttcgtgcattaggggacccttttgagcattcaaagatgtttctttcagctta 13302942  T
Q  210 tataacccttgtataggtatcagaatcctacta 242  Q
    ||||||||||||||||||| || ||||||||||    
T  13302943 tataacccttgtataggtaaca-aatcctacta 13302974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 111 - 242
Target Start/End: Original strand, 13313520 - 13313650
Alignment:
Q  111 gtcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgagggga-cttcttgagcattctaaaatatttcctttaacttg 209  Q
    |||||||||||||  |||||||||||||||| ||||||||| ||||||||||||||  |||||| | | |||||||||  || || |||| || | |||     
T  13313520 gtcgcttaagcgagctgagccttagtcagccactttctgaa-ttttgcttcgtgcattaggggacccttttgagcatttaaagatgtttctttcagctta 13313618  T
Q  210 tataacccttgtataggtatcagaatcctacta 242  Q
    ||||||||||||||||||| || ||||||||||    
T  13313619 tataacccttgtataggtaaca-aatcctacta 13313650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 10415129 - 10415301
Alignment:
Q  1 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaac-cgtgagcgaaccgtaagcg-agctgaacccaga-cctactgtaagccggtcgctt 97  Q
    ||||||||||||||||||||||||  || |||||||||||||||  ||||||||||||| |||| | ||||||| |||   | |||| ||| ||||||||    
T  10415129 gcgaaaaaccattttgattctgtccaaatttcgctcaagcgaacttgtgagcgaaccgtgagcgaacctgaacctagattttcctgt-agctggtcgctt 10415227  T
Q  98 aagcgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgagggg 173  Q
    |||||| ||  || ||||||||||||| || | |||||| | ||| |||||||| ||||||||||||||| |||||    
T  10415228 aagcgagctgcccttcgcttaagcgaactgggtcttagttaacct-tttctgaa-ttttgcttcgtgcactagggg 10415301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 10421799 - 10421971
Alignment:
Q  1 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaac-cgtgagcgaaccgtaagcg-agctgaacccaga-cctactgtaagccggtcgctt 97  Q
    ||||||||||||||||||||||||  || |||||||||||||||  ||||||||||||| |||| | ||||||| |||   | |||| ||| ||||||||    
T  10421799 gcgaaaaaccattttgattctgtccaaatttcgctcaagcgaacttgtgagcgaaccgtgagcgaacctgaacctagattttcctgt-agctggtcgctt 10421897  T
Q  98 aagcgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgagggg 173  Q
    |||||| ||  || ||||||||||||| || | |||||| | ||| |||||||| ||||||||||||||| |||||    
T  10421898 aagcgagctgcccttcgcttaagcgaactgggtcttagttaacct-tttctgaa-ttttgcttcgtgcactagggg 10421971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 49 - 106
Target Start/End: Original strand, 12034015 - 12034072
Alignment:
Q  49 agcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaact 106  Q
    ||||| |||||||||| || |||||||||||||||||||| |||||||||||||||||    
T  12034015 agcgacccgtaagcgaactaaacccagacctactgtaagctggtcgcttaagcgaact 12034072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 167
Target Start/End: Original strand, 19235629 - 19235767
Alignment:
Q  29 gttcgctcaagcgaaccgtgagcgaaccgtaagcgagct-gaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtg 127  Q
    ||||||| |||||||| | ||||||||||| |||||||  | |||   ||||  ||| ||| |||||||||||||| |||  ||||||||||||||| ||    
T  19235629 gttcgcttaagcgaactgcgagcgaaccgtgagcgagcgaggacctcaaccttgtgtgagctggtcgcttaagcgagctactcgtcgcttaagcgaactg 19235728  T
Q  128 agccttagtcagcctctttctgaacttttgcttcgtgcac 167  Q
    ||  ||||||||||  |||||||| |||||||||||||||    
T  19235729 agtgttagtcagcccttttctgaa-ttttgcttcgtgcac 19235767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 328 - 381
Target Start/End: Original strand, 18129607 - 18129660
Alignment:
Q  328 atgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 381  Q
    |||||||||||||| | ||||||||||||||||||||| |||||||| ||||||    
T  18129607 atgaaattgatgtacgagcataattataattaattgtgaatgttctgaattgtt 18129660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 10390040 - 10390104
Alignment:
Q  1 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaac-cgtgagcgaaccgtaagcga 64  Q
    ||||||||||||||||||||||||  || |||||||||||||||  ||||||||||||| |||||    
T  10390040 gcgaaaaaccattttgattctgtccaaatttcgctcaagcgaacttgtgagcgaaccgtgagcga 10390104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 446
Target Start/End: Original strand, 18136249 - 18136306
Alignment:
Q  390 cggagtagtaagtcatatgaaat-atatgtgtagttaagttgtatgtagatatacaca 446  Q
    |||||| |||||||||||||||  |||||  | |||||||||||||||||||||||||    
T  18136249 cggagttgtaagtcatatgaaaacatatgcatggttaagttgtatgtagatatacaca 18136306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 376
Target Start/End: Complemental strand, 9533335 - 9533232
Alignment:
Q  272 ttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgtt 371  Q
    |||||||||||  |||||||||||||||||||  ||||||| ||||| | | ||||||||| || ||| ||  |  | ||||| ||||||||||||| ||    
T  9533335 ttagtgaatttg-gagatgattgagtatgaaactaagtgaacatatactatgttgaatgaactttatgcattagtttgattatgattaattgtgtatttt 9533237  T
Q  372 ctgga 376  Q
    |||||    
T  9533236 ctgga 9533232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 175
Target Start/End: Original strand, 12034057 - 12034119
Alignment:
Q  111 gtcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggggac 175  Q
    |||||||||||||| ||||| ||||||||||  |||||||||  ||||||||||||| |||||||    
T  12034057 gtcgcttaagcgaactgagcgttagtcagcc-atttctgaac-cttgcttcgtgcactaggggac 12034119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 391 - 446
Target Start/End: Original strand, 18129736 - 18129792
Alignment:
Q  391 ggagtagtaagtcatatgaaata-tatgtgtagttaagttgtatgtagatatacaca 446  Q
    ||||| ||||||||||||||| | ||||  | |||||||||||||||||||||||||    
T  18129736 ggagttgtaagtcatatgaaaaaatatgcatggttaagttgtatgtagatatacaca 18129792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 180; Significance: 5e-97; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 1 - 450
Target Start/End: Original strand, 13123510 - 13123967
Alignment:
Q  1 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaag 100  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||  |||||||||||    
T  13123510 gcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaag 13123609  T
Q  101 cgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggggacttcttgagcattctaaaatatttcc 200  Q
    ||| ||||||||||||||||||||||||| |||||||||||| |||||||||| || ||| ||||| ||||||||||||||||||||||| ||  |   |    
T  13123610 cgagctagccgtcgcttaagcgaagtgagtcttagtcagcct-tttctgaactattacttagtgcatgaggggacttcttgagcattctataacttcctc 13123708  T
Q  201 tttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatg 300  Q
    ||||||| |||||||| | || |||||| ||||| |||| |||||||||| |||||| | |||| ||| | ||||| ||| || | | |||||| |||||    
T  13123709 tttaactagtataaccttggtgtaggtagcagaagcctattagaacaagccggtgattggattgattggtattagtaaatgttggtgttgattgtgtatg 13123808  T
Q  301 aaatcaagtgaata--tata-atttat-------tgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttc 390  Q
     ||  |||||||||  |||| || |||        |||||  |||||||||||||||||||||||| ||||||||||||||||| |||| | || || |     
T  13123809 taaataagtgaatacgtatatatgtataacatgaggaatgtgattgatgtatgtgcataattataaataattgtgtatgttctgaattg-tcgagttgt- 13123906  T
Q  391 ggagtagtaagtcatatgaaatatatgt-gtagttaagttgtatgtagatatacacaggtt 450  Q
    |||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  13123907 ggagtattaagtcatatgaaatatatgtagtagttgagttgtatgtagatatacacaggtt 13123967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 12 - 314
Target Start/End: Complemental strand, 13743158 - 13742860
Alignment:
Q  12 ttttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccg 111  Q
    |||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13743158 ttttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgagctgaacccagacctactataagccggtcgcttaagcgaactagccg 13743059  T
Q  112 tcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggggacttcttgagcattctaaaatatttcctttaacttgta 211  Q
    ||||||||||||||||||||||||||||||   ||||||||||||| |||||||| ||||||||||||||||||||||| |||||||| ||||||| |||    
T  13743058 tcgcttaagcgaagtgagccttagtcagcc---ttctgaacttttgtttcgtgcatgaggggacttcttgagcattctataatatttcttttaactagta 13742962  T
Q  212 taacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtga 311  Q
    ||||||| || |||||| | |||||||| |||||| ||| |  ||| | |||  ||| ||||||| ||| || ||| |||||| |||||||| |||||||    
T  13742961 taaccctggtgtaggtaaccgaatcctattagaacgagccgaggattggattaattggtgttagt-aatgttggaggtgattgtgtatgaaaacaagtga 13742863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 4 - 450
Target Start/End: Original strand, 12710442 - 12710896
Alignment:
Q  4 aaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcga 103  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||  ||||||||||||||    
T  12710442 aaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacctgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcga 12710541  T
Q  104 actagccgtcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggggacttcttgagcattctaaaatatttccttt 203  Q
     ||||||||||||||||||||||||| |||||||||||| |||||||||| || ||| ||||| ||||||||||||||||||||||| ||  |   ||||    
T  12710542 gctagccgtcgcttaagcgaagtgagtcttagtcagcct-tttctgaactattacttagtgcatgaggggacttcttgagcattctataacttcctcttt 12710640  T
Q  204 aacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaa 303  Q
    |||| |||||||| | || ||||||  |||| |||| || ||||||| |||||| | |||| ||| | ||||| ||| || | | |||||| ||||| ||    
T  12710641 aactagtataaccttggtgtaggtagaagaagcctattataacaagccggtgattggattgattggtattagtaaatgttggtgttgattgtgtatgtaa 12710740  T
Q  304 tcaagtgaata--tata-atttat-------tgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcgga 393  Q
      |||||||||  |||| || |||        |||||  |||||||||||||||||||||||| ||||||||||||||||| |||| | || || | |||    
T  12710741 ataagtgaatacgtatatatgtataacatgaggaatgtgattgatgtatgtgcataattataaataattgtgtatgttctgaattg-tcgagttat-gga 12710838  T
Q  394 gtagtaagtcatatgaaatatatgt-gtagttaagttgtatgtagatatacacaggtt 450  Q
    ||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  12710839 gtattaagtcatatgaaatatatgtagtagttgagttgtatgtagatatacacaggtt 12710896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 13006894 - 13006706
Alignment:
Q  1 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccag-acctactgtaagccggtcgcttaa 99  Q
    ||||||||||||||| ||||||||  ||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||| ||||||||||    
T  13006894 gcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggtcgcttaa 13006795  T
Q  100 gcgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggggacttcttgagcattct 189  Q
    ||||||||||||||||||||||||||||| ||||| ||||||| |||||||||| |||||| ||||| ||||||||||||||||| ||||    
T  13006794 gcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttagtgcatgaggggacttcttgagcgttct 13006706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 12591237 - 12591389
Alignment:
Q  1 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccaga-cctactgtaagccggtcgcttaa 99  Q
    ||||||||||||||||||||||||  || |||||||||||||||||||||||| |||||||||| |||| |||||| |||||||||||| ||||||||||    
T  12591237 gcgaaaaaccattttgattctgtccaaatttcgctcaagcgaaccgtgagcgacccgtaagcgaactgatcccagatcctactgtaagctggtcgcttaa 12591336  T
Q  100 gcgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttctgaac 152  Q
    ||||||||||||||||||||||||||||| ||||||||||| | |||||||||    
T  12591337 gcgaactagccgtcgcttaagcgaagtgaaccttagtcagcgtttttctgaac 12591389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 3857958 - 3858087
Alignment:
Q  1 gcgaaaaaccatttt-gattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaa 99  Q
    ||||||||||||||| ||||||||   ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||  ||||||||||    
T  3857958 gcgaaaaaccatttttgattctgttcaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaa 3858057  T
Q  100 gcgaactagccgtcgcttaagcgaagtgag 129  Q
    |||| |||||||||||||||||||| ||||    
T  3858058 gcgagctagccgtcgcttaagcgaactgag 3858087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 13 - 151
Target Start/End: Complemental strand, 2464874 - 2464736
Alignment:
Q  13 tttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgt 112  Q
    ||||||||||||  |||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||  |||||||||||||| ||||||||    
T  2464874 tttgattctgtccaaagttcgcccaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagctagccgt 2464775  T
Q  113 cgcttaagcgaagtgagccttagtcagcctctttctgaa 151  Q
    |||||||||||| ||||  ||||| || || ||||||||    
T  2464774 cgcttaagcgaactgagtgttagttagtctttttctgaa 2464736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 13 - 167
Target Start/End: Complemental strand, 16090595 - 16090442
Alignment:
Q  13 tttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgt 112  Q
    |||||||||| ||  | |||||| |||| | |||||||||| |||||||||| ||||||||||||||||||||||  |||||||||||||| ||||||||    
T  16090595 tttgattctgccaagaattcgcttaagcaagccgtgagcgacccgtaagcgaactgaacccagacctactgtaagatggtcgcttaagcgagctagccgt 16090496  T
Q  113 cgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcac 167  Q
    |||||||||||| ||||  ||||||||||| |||||||||  |||||||||||||    
T  16090495 cgcttaagcgaactgagtgttagtcagcctttttctgaac-cttgcttcgtgcac 16090442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 13678985 - 13678649
Alignment:
Q  1 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaag 100  Q
    |||||||| |||||  ||||||||||||||||||| ||||||||||  |||||| ||| ||||||   |||||  ||   ||||||||||||||||||||    
T  13678985 gcgaaaaatcatttccattctgtcagaagttcgcttaagcgaaccgcaagcgaaacgttagcgagggaaaccccaactctctgtaagccggtcgcttaag 13678886  T
Q  101 cgaactagccgtcgcttaagcgaag-tgagccttagtcagcctctttctgaacttttgcttcgtgcacgagggga-cttcttgagcattctaaaatattt 198  Q
    ||||| ||||||||||||||||||| ||| |||||||||||| |||| ||||| ||||| |||||||  |||||| | | |||||||||  ||||| |||    
T  13678885 cgaaccagccgtcgcttaagcgaagatga-ccttagtcagccactttttgaac-tttgcctcgtgcattaggggatccttttgagcattaaaaaatgttt 13678788  T
Q  199 cctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagta 298  Q
    | || || |||||||||| || |||| | | | ||||||||||  ||||   |||| |||||||| |||||  |||||||| |||  |||||||||||||    
T  13678787 ctttcaatttgtataacctttatatatgca-ctgaatcctactgaaacactttggtaatcgaattagttgagtttagtgaa-tttgaagatgattgagta 13678690  T
Q  299 tgaaatcaagtgaatatataatttattgaatgaaattgatg 339  Q
    | | | |||||||| ||||| | | ||||||||| ||||||    
T  13678689 tcataccaagtgaacatatactatgttgaatgaacttgatg 13678649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 13 - 167
Target Start/End: Original strand, 29181654 - 29181807
Alignment:
Q  13 tttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgt 112  Q
    |||||||||| ||  |||||||| |||||| |||||||||| || ||||||| ||||||||||||||||||||||  |||||||||||||| ||||||||    
T  29181654 tttgattctgccaagagttcgcttaagcgagccgtgagcgacccataagcgaactgaacccagacctactgtaagatggtcgcttaagcgagctagccgt 29181753  T
Q  113 cgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcac 167  Q
    ||||||||| || ||||  |||||||| || |||||||||  |||||||||||||    
T  29181754 cgcttaagcaaactgagtgttagtcagtctttttctgaac-cttgcttcgtgcac 29181807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 49 - 224
Target Start/End: Complemental strand, 16676798 - 16676623
Alignment:
Q  49 agcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttct 148  Q
    |||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||   |||||||||||| |||| |    
T  16676798 agcgaaccataagcgagcggaacccagacttactgtaagccggtcgcttaagcgaactagtcgtcgcttaagcgaagttgaccttagtcagccacttttt 16676699  T
Q  149 gaacttttgcttcgtgcacgagggga-cttcttgagcattctaaaatatttcctttaacttgtataacccttgtata 224  Q
    ||||  |||| |||||||  |||||| | | |||||||||  || ||  |||||| |||||||||||||||| ||||    
T  16676698 gaac-gttgcctcgtgcattaggggacccttttgagcattgaaacatggttccttcaacttgtataacccttatata 16676623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 49 - 224
Target Start/End: Complemental strand, 17651034 - 17650859
Alignment:
Q  49 agcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttct 148  Q
    |||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||   |||||||||||| |||| |    
T  17651034 agcgaaccataagcgagcggaacccagacttactgtaagccggtcgcttaagcgaactagtcgtcgcttaagcgaagttgaccttagtcagccacttttt 17650935  T
Q  149 gaacttttgcttcgtgcacgagggga-cttcttgagcattctaaaatatttcctttaacttgtataacccttgtata 224  Q
    ||||  |||| |||||||  |||||| | | |||||||||  || ||  |||||| |||||||||||||||| ||||    
T  17650934 gaac-gttgcctcgtgcattaggggacccttttgagcattgaaacatggttccttcaacttgtataacccttatata 17650859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 13 - 125
Target Start/End: Original strand, 20311597 - 20311709
Alignment:
Q  13 tttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgt 112  Q
    |||||||||| ||  | |||||| ||||||||||  |||||||||||||||||| |||||||||| ||||| ||||||||||||||||||| ||||||||    
T  20311597 tttgattctgccaagaattcgcttaagcgaaccgcaagcgaaccgtaagcgagcagaacccagacttactgcaagccggtcgcttaagcgagctagccgt 20311696  T
Q  113 cgcttaagcgaag 125  Q
    |||||||||||||    
T  20311697 cgcttaagcgaag 20311709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 19 - 318
Target Start/End: Complemental strand, 46625464 - 46625166
Alignment:
Q  19 tctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgctta 118  Q
    |||| |||||||||||| |||||||||| |||| |||| | ||||||| |||| |  ||   |||||||| |||||||||||||| | ||||||||||||    
T  46625464 tctgccagaagttcgcttaagcgaaccgcgagcaaaccattagcgagcagaacgccaactctctgtaagcaggtcgcttaagcgagccagccgtcgctta 46625365  T
Q  119 agcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgagggga-cttcttgagcattctaaaatatttcctttaacttgtataaccc 217  Q
    ||||||||  | ||||||||||| || | |||| ||||| ||||||||| |||| | | | ||||||||| |||||| |||| || ||||||||| ||||    
T  46625364 agcgaagtaggtcttagtcagccactctttgaa-ttttgtttcgtgcactagggaatccttttgagcattttaaaatgtttctttcaacttgtatgaccc 46625266  T
Q  218 ttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatatat 317  Q
    | ||||| | | |  |||||||||  ||||   |||| || |||||||||||   |||||||||||  | |||||||||||||||| ||| |||||||||    
T  46625265 tggtatatgca-ctaaatcctactgaaacacattggtaattgaattggttgaatatagtgaattttgaatatgattgagtatgaaaccaaatgaatatat 46625167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 49 - 155
Target Start/End: Original strand, 11389918 - 11390024
Alignment:
Q  49 agcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaag-tgagccttagtcagcctctttc 147  Q
    |||||||||||||||||| |||||||||| |||||| || ||||||||||||||| ||||||||||||||||||||| ||| |||||||||||| ||||     
T  11389918 agcgaaccgtaagcgagcggaacccagacttactgtgagtcggtcgcttaagcgagctagccgtcgcttaagcgaagatga-ccttagtcagccactttt 11390016  T
Q  148 tgaacttt 155  Q
    ||||||||    
T  11390017 tgaacttt 11390024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 333 - 450
Target Start/End: Complemental strand, 13742803 - 13742686
Alignment:
Q  333 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 431  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||| || || | ||||||||||||||||||||| ||||||  ||||  ||||||    
T  13742803 attgatgtatgagcataattataaataattgtgtatgttctggattgtttgagttgt-ggagtagtaagtcatatgaaacatatgtaatagtcgagttgt 13742705  T
Q  432 atgtagatatacacaggtt 450  Q
    |||| ||||||||||||||    
T  13742704 atgttgatatacacaggtt 13742686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 59 - 174
Target Start/End: Original strand, 11383440 - 11383554
Alignment:
Q  59 aagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaag-tgagccttagtcagcctctttctgaacttttg 157  Q
    |||||||| |||||||||| |||||| |||| ||||||||||||| ||||||||||||||||||||| ||| |||||||||||| |||| ||||| ||||    
T  11383440 aagcgagcggaacccagacttactgtgagcctgtcgcttaagcgagctagccgtcgcttaagcgaagatga-ccttagtcagccactttttgaac-tttg 11383537  T
Q  158 cttcgtgcacgagggga 174  Q
    | |||||||| ||||||    
T  11383538 cctcgtgcactagggga 11383554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 29 - 152
Target Start/End: Original strand, 14320192 - 14320316
Alignment:
Q  29 gttcgctcaagcgaaccgtgagcgaaccgtaagcgagct-gaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtg 127  Q
    ||||||||||||||||||||||||||| || |||||||  | |||   || | |||| |||||||||||||||||| ||| || ||||||||||||| ||    
T  14320192 gttcgctcaagcgaaccgtgagcgaactgtgagcgagcgaggacctcaactttctgtgagccggtcgcttaagcgagctacccttcgcttaagcgaactg 14320291  T
Q  128 agccttagtcagcctctttctgaac 152  Q
    ||||||||||||||| |||||||||    
T  14320292 agccttagtcagcctttttctgaac 14320316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 2966476 - 2966383
Alignment:
Q  13 tttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaact 106  Q
    |||||||||| ||  | |||||| |||||| |||||| ||| || ||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  2966476 tttgattctgccaagaattcgcttaagcgagccgtgaacgacccataagcgaactgaacccagacctactgtaagctggtcgcttaagcgaact 2966383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 333 - 449
Target Start/End: Complemental strand, 13006604 - 13006489
Alignment:
Q  333 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 431  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||| || || | ||||||||||||||||| | | |||||| || ||  ||||||    
T  13006604 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttgt-ggagtagtaagtcatattatacatatgtagtggtcgagttgt 13006507  T
Q  432 atgtagatatacacaggt 449  Q
    ||||||||||||||||||    
T  13006506 atgtagatatacacaggt 13006489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 20906993 - 20907086
Alignment:
Q  13 tttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaact 106  Q
    |||||||||| ||  | |||||| |||||| |||||| |||| | ||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  20906993 tttgattctgccaagaattcgcttaagcgagccgtgaacgaaacataagcgaactgaacccagacctactgtaagctggtcgcttaagcgaact 20907086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 376
Target Start/End: Complemental strand, 18607339 - 18607248
Alignment:
Q  285 gagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctgga 376  Q
    ||||||||||||||||||| |||||||| ||||| | | ||||||||| |||||| ||  |  | ||||| ||||||||||||| |||||||    
T  18607339 gagatgattgagtatgaaaccaagtgaacatatactatgttgaatgaacttgatgcattagtttgattatgattaattgtgtattttctgga 18607248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 174
Target Start/End: Original strand, 21231567 - 21231690
Alignment:
Q  49 agcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaag-tgagccttagtcagcctctttc 147  Q
    |||||||||| ||||||| ||||||  || | |||| ||| |||||||||||| |||| | |||||||||||||||| ||| |||| ||||||| ||||     
T  21231567 agcgaaccgtcagcgagcggaaccccaactttctgtgagctggtcgcttaagcaaactggtcgtcgcttaagcgaagatga-cctttgtcagccacttt- 21231664  T
Q  148 tgaacttttgcttcgtgcacgagggga 174  Q
    ||||| ||||| |||||||| ||||||    
T  21231665 tgaac-tttgcctcgtgcactagggga 21231690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 376
Target Start/End: Complemental strand, 147556 - 147453
Alignment:
Q  272 ttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgtt 371  Q
    |||||||||||  ||||||||||||||||||| |||||||| || || | | ||||||||| |||||| ||  |  | ||||| ||||||||||||| ||    
T  147556 ttagtgaatttg-gagatgattgagtatgaaaccaagtgaacatgtactatgttgaatgaacttgatgcattagtttgattatgattaattgtgtatttt 147458  T
Q  372 ctgga 376  Q
    |||||    
T  147457 ctgga 147453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 13679030 - 13678982
Alignment:
Q  17 attctgtcagaagttcgctcaagcgaaccgtgagcgaa-ccgtaagcga 64  Q
    ||||||||||| | |||||||||||||||||||||||| ||||||||||    
T  13679030 attctgtcagacgctcgctcaagcgaaccgtgagcgaacccgtaagcga 13678982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 16676835 - 16676791
Alignment:
Q  1 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaacc 45  Q
    |||||||||||||||||||||||||  | ||||||||||||||||    
T  16676835 gcgaaaaaccattttgattctgtcaagaattcgctcaagcgaacc 16676791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 17651071 - 17651027
Alignment:
Q  1 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaacc 45  Q
    |||||||||||||||||||||||||  | ||||||||||||||||    
T  17651071 gcgaaaaaccattttgattctgtcaagaattcgctcaagcgaacc 17651027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 376
Target Start/End: Original strand, 16475929 - 16475983
Alignment:
Q  322 tattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctgga 376  Q
    ||||||||||| | |||||||| |||| ||||| ||||||||||||| |||||||    
T  16475929 tattgaatgaactcgatgtatgagcatgattatgattaattgtgtattttctgga 16475983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 21231532 - 21231582
Alignment:
Q  3 gaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcga 53  Q
    |||||| |||||| |||||  |||||||||||||||||||||||| |||||    
T  21231532 gaaaaatcattttcattctaccagaagttcgctcaagcgaaccgtcagcga 21231582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 13664487 - 13664450
Alignment:
Q  28 agttcgctcaagcgaaccgtgagcgaa-ccgtaagcga 64  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  13664487 agttcgctcaagcgaaccgtgagcgaacccgtaagcga 13664450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 123
Target Start/End: Complemental strand, 46625584 - 46625551
Alignment:
Q  90 ggtcgcttaagcgaactagccgtcgcttaagcga 123  Q
    |||||||||||||||||| |||||||||||||||    
T  46625584 ggtcgcttaagcgaactacccgtcgcttaagcga 46625551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 381
Target Start/End: Complemental strand, 13318051 - 13318007
Alignment:
Q  337 atgtatgtgcataattataattaattgtgtatgttctggattgtt 381  Q
    ||||||| |||||||||| ||||||||||||  ||||||||||||    
T  13318051 atgtatgcgcataattatgattaattgtgtaatttctggattgtt 13318007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 175
Target Start/End: Original strand, 20907071 - 20907133
Alignment:
Q  111 gtcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggggac 175  Q
    |||||||||||||| ||||| ||||||||||| | |||||| | ||||||||||||| |||||||    
T  20907071 gtcgcttaagcgaactgagcgttagtcagcct-tatctgaa-tcttgcttcgtgcactaggggac 20907133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 174
Target Start/End: Complemental strand, 31154825 - 31154742
Alignment:
Q  90 ggtcgcttaagcgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgagggga 174  Q
    |||||||||||||| ||  || ||||||||||||| || | |||||| | ||| ||||||||| ||||| |||||||| ||||||    
T  31154825 ggtcgcttaagcgagctgcccttcgcttaagcgaactgggtcttagttaacctttttctgaac-tttgcctcgtgcactagggga 31154742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 173; Significance: 7e-93; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 1 - 450
Target Start/End: Original strand, 8046427 - 8046893
Alignment:
Q  1 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaag 100  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||  |||||||||||    
T  8046427 gcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactataagttggtcgcttaag 8046526  T
Q  101 cgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggggacttcttgagcattctaaaatatttcc 200  Q
    ||| |||| ||||||||||||||||||||||||||||||||| |||||||||| || ||| ||||| ||||||||||||||||||||||| ||  |   |    
T  8046527 cgagctagacgtcgcttaagcgaagtgagccttagtcagcctttttctgaactgttacttagtgcatgaggggacttcttgagcattctataacttcctc 8046626  T
Q  201 tttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatg 300  Q
    ||||||| |||||||||| || |||||| | |||||||| |||||||||| || ||| | |||| ||| ||||||| ||| || |||||||||| |||||    
T  8046627 tttaactagtataaccctggtgtaggtaaccgaatcctattagaacaagccggcgattggattgattggtgttagtaaatgttggagatgattgtgtatg 8046726  T
Q  301 aaatcaagtgaatatata-attta-----------------ttgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtta 382  Q
    ||| |||||||||||||| || ||                 | |||||  |||||||| ||||||||||||||| |||||||||||| | ||||||  |     
T  8046727 aaaacaagtgaatatatatatatatatatatatataacatgtggaatgtgattgatgtgtgtgcataattataaataattgtgtatgatttggattact- 8046825  T
Q  383 gaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgtatgtagatatacacaggtt 450  Q
    || || | ||||||||||||||||||||||||||||  ||||  |||||||||||||||||||||||||    
T  8046826 gagttgt-ggagtagtaagtcatatgaaatatatgtaatagtcgagttgtatgtagatatacacaggtt 8046893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 53483164 - 53483013
Alignment:
Q  1 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccaga-cctactgtaagccggtcgcttaa 99  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||| |||| |||||| |||||||||||| ||||||||||    
T  53483164 gcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgagcccagagcctactgtaagctggtcgcttaa 53483065  T
Q  100 gcgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttctgaac 152  Q
    ||||||| ||||||||||||||||||||| ||||||||||||| |||||||||    
T  53483064 gcgaacttgccgtcgcttaagcgaagtgaaccttagtcagcct-tttctgaac 53483013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 13 - 167
Target Start/End: Original strand, 16147376 - 16147529
Alignment:
Q  13 tttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgt 112  Q
    |||||||||| ||  | |||||| |||||| |||||||||| |||||||||| ||||||||||||||||||||||  |||||||||||||| ||||||||    
T  16147376 tttgattctgccaagaattcgcttaagcgagccgtgagcgacccgtaagcgaactgaacccagacctactgtaagatggtcgcttaagcgagctagccgt 16147475  T
Q  113 cgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcac 167  Q
    |||||||||||| ||||  ||||||||||| |||||||||  |||||||||||||    
T  16147476 cgcttaagcgaactgagtgttagtcagcctttttctgaac-cttgcttcgtgcac 16147529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 13 - 175
Target Start/End: Complemental strand, 11847614 - 11847453
Alignment:
Q  13 tttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagct-gaacccagacctactgtaagccggtcgcttaagcgaactagccg 111  Q
    |||||||||| ||  | |||||| ||||||||||||||||| ||||||||||||| ||| ||| || | ||||| |  |||||||||||||||||| |||    
T  11847614 tttgattctgccaagaattcgcttaagcgaaccgtgagcgacccgtaagcgagctagaatccaaacttcctgta-gttggtcgcttaagcgaactacccg 11847516  T
Q  112 tcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggggac 175  Q
    ||||||||||||  ||||||||||||||||||||||||||| ||||||| |||||| |||||||    
T  11847515 tcgcttaagcgagctgagccttagtcagcctctttctgaac-tttgctttgtgcactaggggac 11847453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 19 - 172
Target Start/End: Complemental strand, 15244719 - 15244566
Alignment:
Q  19 tctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgctta 118  Q
    ||||||||||||||||| ||||||||||||||||| || | ||||||| |||| |  ||   |||||||||||||||||||||||   | ||||||||||    
T  15244719 tctgtcagaagttcgcttaagcgaaccgtgagcgagccattagcgagcggaacgccaactctctgtaagccggtcgcttaagcgagtcaaccgtcgctta 15244620  T
Q  119 agcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggg 172  Q
    | |||||   | ||||||||||| |||| |||| ||||||||||||||| ||||    
T  15244619 atcgaagaaggtcttagtcagccactttttgaaattttgcttcgtgcactaggg 15244566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 49 - 141
Target Start/End: Complemental strand, 14486144 - 14486052
Alignment:
Q  49 agcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtgagccttagtcagcc 141  Q
    |||||||||| ||||||| ||||||| ||   ||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||    
T  14486144 agcgaaccgtgagcgagcggaacccaaactctctgtaagccggtcgcttaagcgagccagccttcgcttaagcgaagtgagccttagtcagcc 14486052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 15407598 - 15407438
Alignment:
Q  1 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaag 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||           || ||||| |||| | |||| |||||||||||||||    
T  15407598 gcgaaaaaccattttgattctgccagaagttcgctcaagcgaaccgtcagcga-----------gcggaacctagactttctgtgagccggtcgcttaag 15407510  T
Q  101 cgaactagccgtcgcttaagcgaag-tgagccttagtcagcctctttctgaacttttgcttcgtgcacgagggga 174  Q
    |||||| |||||||||||||||||| ||| || ||||||||| |||| ||||| ||||| |||||||| ||||||    
T  15407509 cgaactggccgtcgcttaagcgaagatga-ccatagtcagccacttt-tgaac-tttgcctcgtgcactagggga 15407438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 172
Target Start/End: Complemental strand, 13887289 - 13887138
Alignment:
Q  19 tctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgctta 118  Q
    ||||||||||||| ||| |||||||||||| ||||||| | ||||||| |||| |  ||   |||||||||||||| |||||||| | ||||||||||||    
T  13887289 tctgtcagaagtttgcttaagcgaaccgtgcgcgaaccattagcgagcagaacgccaactctctgtaagccggtcgtttaagcgagccagccgtcgctta 13887190  T
Q  119 agcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggg 172  Q
    |||||||   | |||||| |||| |||| |||| ||||||||||||||| ||||    
T  13887189 agcgaagaaggtcttagttagccacttt-tgaa-ttttgcttcgtgcactaggg 13887138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 172
Target Start/End: Complemental strand, 13888146 - 13887995
Alignment:
Q  19 tctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgctta 118  Q
    ||||||||||||| ||| |||||||||||| ||||||| | ||||||| |||| |  ||   |||||||||||||| |||||||| | ||||||||||||    
T  13888146 tctgtcagaagtttgcttaagcgaaccgtgcgcgaaccattagcgagcagaacgccaactctctgtaagccggtcgtttaagcgagccagccgtcgctta 13888047  T
Q  119 agcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggg 172  Q
    |||||||   | |||||| |||| |||| |||| ||||||||||||||| ||||    
T  13888046 agcgaagaaggtcttagttagccacttt-tgaa-ttttgcttcgtgcactaggg 13887995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 324 - 381
Target Start/End: Original strand, 14555881 - 14555938
Alignment:
Q  324 ttgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 381  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  14555881 ttgaatgaaattgatgtatgagcataattataattaattgtgtttgttctggattgtt 14555938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 23 - 172
Target Start/End: Complemental strand, 15307620 - 15307471
Alignment:
Q  23 tcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcg 122  Q
    ||||||||||||| ||||||||||||||||| || | ||||||| |||| |  ||   ||||||| ||||||||||||||| | |||| |||||||||||    
T  15307620 tcagaagttcgcttaagcgaaccgtgagcgagccattagcgagcggaacgccaactctctgtaagtcggtcgcttaagcgagccagccatcgcttaagcg 15307521  T
Q  123 aagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggg 172  Q
    |||   | ||||||||||| ||||  |||  |||||||||||||| ||||    
T  15307520 aagaaggtcttagtcagccacttttcgaaactttgcttcgtgcactaggg 15307471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 14486037 - 14485975
Alignment:
Q  179 ttgagcattctaaaatatttcctttaacttgtataacccttgtataggtatcagaatcctacta 242  Q
    |||||||||||||||| |||| || | |||||||||||||||||||||||||| ||||||||||    
T  14486037 ttgagcattctaaaatgtttctttcagcttgtataacccttgtataggtatca-aatcctacta 14485975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 92 - 175
Target Start/End: Complemental strand, 27905695 - 27905613
Alignment:
Q  92 tcgcttaagcgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggggac 175  Q
    |||||||||||| ||| || ||||||||||||  ||||||| |||||||| ||||||||| ||||||||||||||  |||||||    
T  27905695 tcgcttaagcgagctacccttcgcttaagcgagctgagcct-agtcagccactttctgaatttttgcttcgtgcattaggggac 27905613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 272 - 373
Target Start/End: Complemental strand, 18212623 - 18212523
Alignment:
Q  272 ttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgtt 371  Q
    |||||||||||  ||||||||||||||||||| |||||||| ||||| | | ||||||||| |||||| ||  |  | ||||| ||||||||||||| ||    
T  18212623 ttagtgaatttg-gagatgattgagtatgaaaccaagtgaacatatactatgttgaatgaacttgatgcattagtttgattatgattaattgtgtatttt 18212525  T
Q  372 ct 373  Q
    ||    
T  18212524 ct 18212523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 171; Significance: 1e-91; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 2 - 450
Target Start/End: Complemental strand, 23866073 - 23865615
Alignment:
Q  2 cgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagc 101  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||  ||||||||||||    
T  23866073 cgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagc 23865974  T
Q  102 gaactagccgtcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggggacttcttgagcattctaaaatatttcct 201  Q
    || ||||||||||||||||||||||||| |||||||||||| |||||||||| || ||| ||||| ||||||||||||||||||||||| ||  |   ||    
T  23865973 gagctagccgtcgcttaagcgaagtgagtcttagtcagcctttttctgaactattacttagtgcatgaggggacttcttgagcattctataacttcctct 23865874  T
Q  202 ttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatga 301  Q
    |||||| |||||||| | || |||||| ||||| |||| |||||||||| |||||| | |||| ||| | ||||| ||| || |   |||||| |||||     
T  23865873 ttaactagtataaccttggtgtaggtagcagaagcctattagaacaagccggtgattggattgattggtattagtaaatgttggtattgattgtgtatgt 23865774  T
Q  302 aatcaagtgaata----------tataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcg 391  Q
    ||  |||||||||          |||||  |   |||||  |||||||||||||||||||||||| ||||||||||||||||| ||||||   | || ||    
T  23865773 aaataagtgaatacgtgtatatgtataacatgaggaatgtgattgatgtatgtgcataattataaataattgtgtatgttctgaattgtt--gagttacg 23865676  T
Q  392 gagtagtaagtc-atatgaaatatatg-tgtagttaagttgtatgtagatatacacaggtt 450  Q
    |||||||||||| ||||||||||||||   ||||| |||||||||||||||||||||||||    
T  23865675 gagtagtaagtcaatatgaaatatatgcattagttgagttgtatgtagatatacacaggtt 23865615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 13 - 175
Target Start/End: Original strand, 24321216 - 24321376
Alignment:
Q  13 tttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgt 112  Q
    |||||||||| ||  | |||||| |||||| |||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  24321216 tttgattctgccaagaattcgcttaagcgagccgtgagcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgt 24321315  T
Q  113 cgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggggac 175  Q
    |||||||||||| ||||  |||| |||||| |||||||| | ||||||||| ||| |||||||    
T  24321316 cgcttaagcgaactgagtgttagacagcct-tttctgaa-tcttgcttcgtacactaggggac 24321376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 17054053 - 17053949
Alignment:
Q  1 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccag-acctactgtaagccggtcgcttaa 99  Q
    ||||||||||||||| ||||||||  ||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||| ||||||||||    
T  17054053 gcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggtcgcttaa 17053954  T
Q  100 gcgaa 104  Q
    |||||    
T  17053953 gcgaa 17053949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 333 - 450
Target Start/End: Original strand, 19902808 - 19902924
Alignment:
Q  333 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 431  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||  || || | |||||| ||||||||||||||||||||| |||||| ||||||    
T  19902808 attgatgtatgtgcatgattataaataattgtgtatgttctggattgtc-gagttgt-ggagtattaagtcatatgaaatatatgtagtagttgagttgt 19902905  T
Q  432 atgtagatatacacaggtt 450  Q
    |||||||||||||||||||    
T  19902906 atgtagatatacacaggtt 19902924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 49 - 339
Target Start/End: Complemental strand, 18613695 - 18613409
Alignment:
Q  49 agcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaag-tgagccttagtcagcctctttc 147  Q
    |||||||||| ||||||| ||||||  ||   |||||||| |||||||||||||||| ||||||||||||||||||| ||| |||||||| ||| ||||     
T  18613695 agcgaaccgttagcgagcggaaccccaactctctgtaagcaggtcgcttaagcgaaccagccgtcgcttaagcgaagatga-ccttagtcggccacttt- 18613598  T
Q  148 tgaacttttgcttcgtgcacgagggga-cttcttgagcattctaaaatatttcctttaacttgtataacccttgtataggtatcagaatcctactagaac 246  Q
    ||||| ||||| |||||||| |||||| | |||||||||||  ||||| || | || ||||||||||||| || ||||   | | |||||||||| |||     
T  18613597 tgaac-tttgcctcgtgcactaggggatcctcttgagcatttaaaaatgttcctttcaacttgtataacctttatatataca-ctgaatcctact-gaaa 18613501  T
Q  247 aagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 339  Q
     |  |||| |||||||| |||||  |||||||| ||| ||||||||||||||||||| || ||||| ||||| |   ||||||||| ||||||    
T  18613500 cacttggtaatcgaattagttgagtttagtgaa-tttggagatgattgagtatgaaaccatgtgaacatatactacgttgaatgaacttgatg 18613409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 25111498 - 25111338
Alignment:
Q  1 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaag 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||           || |||||||||| | |||| || ||||||||||||    
T  25111498 gcgaaaaaccattttgattctgccagaagttcgctcaagcgaaccgtcagcga-----------gcggaacccagactttctgtgagtcggtcgcttaag 25111410  T
Q  101 cgaactagccgtcgcttaagcgaag-tgagccttagtcagcctctttctgaacttttgcttcgtgcacgagggga 174  Q
    |||||| |||||||||||||||||| ||| || ||||||||| |||| ||||| ||||| |||||||| ||||||    
T  25111409 cgaactggccgtcgcttaagcgaagatga-ccatagtcagccacttt-tgaac-tttgcctcgtgcactagggga 25111338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 49 - 125
Target Start/End: Original strand, 14057195 - 14057271
Alignment:
Q  49 agcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaag 125  Q
    |||||||||| ||||||| |||||||||| | |||| |||||||||||||||||| |||||||||||||||||||||    
T  14057195 agcgaaccgtcagcgagcggaacccagactttctgtgagccggtcgcttaagcgagctagccgtcgcttaagcgaag 14057271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 324 - 379
Target Start/End: Original strand, 19987990 - 19988045
Alignment:
Q  324 ttgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattg 379  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  19987990 ttgaatgaaattgatgtatgagcataattgtaattaattgtgtatgttctggattg 19988045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 14057160 - 14057204
Alignment:
Q  3 gaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgt 47  Q
    |||||||||||||||||||| || |||||||||||||||||||||    
T  14057160 gaaaaaccattttgattctgccataagttcgctcaagcgaaccgt 14057204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 81 - 224
Target Start/End: Complemental strand, 21931161 - 21931018
Alignment:
Q  81 ctgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtgagccttag-tcagcctctttctgaacttttgcttcgtgcacgagggga--ctt 177  Q
    ||||||| |||||||||||| |||| |||| ||||||||||||||   ||||| | |||||| |||| |||  ||||||||| | ||| |||| |  | |    
T  21931161 ctgtaagtcggtcgcttaagtgaaccagccttcgcttaagcgaagaaggcctttggtcagccactttttga--ttttgcttcctccactagggaatccat 21931064  T
Q  178 cttgagcattctaaaatatttcctttaacttgtataacccttgtata 224  Q
    || |||||||||||||| |||| || ||||||||||||| |||||||    
T  21931063 ct-gagcattctaaaatgtttctttcaacttgtataacctttgtata 21931018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 375
Target Start/End: Original strand, 20005423 - 20005473
Alignment:
Q  325 tgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctgg 375  Q
    |||||||| ||||||||||||||| ||||| ||| ||||||||| ||||||    
T  20005423 tgaatgaacttgatgtatgtgcatgattatgattgattgtgtattttctgg 20005473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 446
Target Start/End: Original strand, 20005563 - 20005612
Alignment:
Q  397 gtaagtcatatgaaatatatgtgtagttaagttgtatgtagatatacaca 446  Q
    ||||||||||| | |||||||  | |||||||||||||||||||||||||    
T  20005563 gtaagtcatattatatatatgcattgttaagttgtatgtagatatacaca 20005612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 449
Target Start/End: Complemental strand, 17053870 - 17053780
Alignment:
Q  358 taattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgtatgtagatatacacaggt 449  Q
    |||||||||| || |||||||||| || || | ||||||||| ||||||||| | |||||| || ||  ||||||||||||||||||||||||    
T  17053870 taattgtgtaagt-ctggattgtttgagttgt-ggagtagtatgtcatatgatacatatgtagtggtcgagttgtatgtagatatacacaggt 17053780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 21839865 - 21839821
Alignment:
Q  81 ctgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaag 125  Q
    ||||||| ||||||||||||||||| |||| || |||||||||||    
T  21839865 ctgtaagtcggtcgcttaagcgaaccagccttcacttaagcgaag 21839821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 168; Significance: 7e-90; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 1 - 450
Target Start/End: Original strand, 9171 - 9628
Alignment:
Q  1 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaag 100  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||  |||||||||||    
T  9171 gcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccataagcgaactgaacccagacctactgtaagttggtcgcttaag 9270  T
Q  101 cgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggggacttcttgagcattctaaaatatttcc 200  Q
    ||| ||||||||||||||||||||||||| |||||||||||| ||||| ||||||| ||| ||||| ||||||||||||||||||||||  ||  |   |    
T  9271 cgagctagccgtcgcttaagcgaagtgagtcttagtcagcct-tttctaaacttttacttagtgcatgaggggacttcttgagcattctgtaacttcctc 9369  T
Q  201 tttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatg 300  Q
    ||||||| |||||||| | || |||||| ||||| |||| |||||||||| |||||  | |||| |||   ||||| ||| || | | |||||| |||||    
T  9370 tttaactagtataaccttggtgtaggtagcagaagcctattagaacaagccggtgactggattgattggcattagtaaatgttggtgttgattgtgtatg 9469  T
Q  301 aaatcaagtgaata--tata-atttat-------tgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttc 390  Q
    |||  |||||||||  |||| || |||       ||||||  |||||||||||||||| ||||||| ||||||| |||||||||||||| | || || |     
T  9470 aaaataagtgaatacgtatatatgtataacatgatgaatgtgattgatgtatgtgcatgattataaataattgtatatgttctggattg-tcgagttgt- 9567  T
Q  391 ggagtagtaagtcatatgaaatatatgt-gtagttaagttgtatgtagatatacacaggtt 450  Q
    |||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  9568 ggagtattaagtcatatgaaatatatgtagtagttgagttgtatgtagatatacacaggtt 9628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 640 - 324
Alignment:
Q  1 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaag 100  Q
    ||||||||||||||||||||||||  |||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||    
T  640 gcgaaaaaccattttgattctgtccaaagttcgctcaatcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaag 541  T
Q  101 cgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggggacttcttgagcattctaaaatatttcc 200  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||| || ||| ||||| ||||||||||||||||||||||| ||  |   |    
T  540 cgaactagccgtcgcttaagcgaagtgagtcttagtcagcct-tttctgaactattacttagtgcatgaggggacttcttgagcattctataacttcctc 442  T
Q  201 tttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatg 300  Q
    ||||||| |||||||| | || |||||| | |||||||| ||||||||||  ||||| | |||| ||| ||||||| ||| || |||||||| | |||||    
T  441 tttaactagtataaccttggtgtaggtaaccgaatcctattagaacaagccagtgattggattgattggtgttagtaaatgttggagatgatggtgtatg 342  T
Q  301 aaatcaagtgaatatata 318  Q
    ||| ||||||||||||||    
T  341 aaaacaagtgaatatata 324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 333 - 450
Target Start/End: Complemental strand, 269 - 153
Alignment:
Q  333 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 431  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||| ||  | | ||||||||||||||||||||||||||||  ||||| ||||||    
T  269 attgatgtgtgtgcataattataaataattgtgtatgttctggattgtt-gagctgt-ggagtagtaagtcatatgaaatatatgtaatagttgagttgt 172  T
Q  432 atgtagatatacacaggtt 450  Q
    |||||||||||||||||||    
T  171 atgtagatatacacaggtt 153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 153; Significance: 6e-81; HSPs: 3)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 1 - 450
Target Start/End: Complemental strand, 111374 - 110939
Alignment:
Q  1 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaag 100  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||  ||||||         
T  111374 gcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccatacctactgtaagttggtcgc----- 111280  T
Q  101 cgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggggacttcttgagcattctaaaatatttcc 200  Q
                   |||||||||||||| |||||||||||| |||||||||| || ||| ||||| ||||||||||||||||||||||| ||| | |||    
T  111279 ---------------ttaagcgaagtgagtcttagtcagcct-tttctgaactattacttagtgcatgaggggacttcttgagcattctataatttctcc 111196  T
Q  201 tttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatg 300  Q
    ||||||| |||||||||| || |||||| | |||||||| |||||||||| |||||| | |||| ||| ||||||| ||| || |||||||||| |||||    
T  111195 tttaactagtataaccctggtgtaggtaactgaatcctattagaacaagccggtgattggattgattggtgttagtaaatgttggagatgattgtgtatg 111096  T
Q  301 aaatcaagtga--------atatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcgg 392  Q
    ||| |||||||        ||||||||  | | |||||  |||||||||||||| ||||||||| |||||||||| ||||||||||| | || || | ||    
T  111095 aaaacaagtgaatatgtatatatataacatgtggaatgtgattgatgtatgtgcgtaattataaataattgtgtaggttctggattg-tcgagttgt-gg 110998  T
Q  393 agtagtaagtcatatgaaatatatgt-gtagttaagttgtatgtagatatacacaggtt 450  Q
    ||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||    
T  110997 agtagtaagtcatatgaaatatatgtaatagttgagttgtatgtagatatacacaggtt 110939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 13 - 142
Target Start/End: Original strand, 91747 - 91876
Alignment:
Q  13 tttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgt 112  Q
    ||||||||||||  |||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||  |||||||||||||| ||||||||    
T  91747 tttgattctgtccaaagttcgcccaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagctagccgt 91846  T
Q  113 cgcttaagcgaagtgagccttagtcagcct 142  Q
    |||||||||||| ||||  ||||| |||||    
T  91847 cgcttaagcgaactgagtgttagttagcct 91876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 13 - 142
Target Start/End: Original strand, 97473 - 97602
Alignment:
Q  13 tttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgt 112  Q
    ||||||||||||  |||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||  |||||||||||||| ||||||||    
T  97473 tttgattctgtccaaagttcgcccaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagctagccgt 97572  T
Q  113 cgcttaagcgaagtgagccttagtcagcct 142  Q
    |||||||||||| ||||  ||||| |||||    
T  97573 cgcttaagcgaactgagtgttagttagcct 97602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 143; Significance: 6e-75; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 1 - 449
Target Start/End: Complemental strand, 23528092 - 23527632
Alignment:
Q  1 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccag-acctactgtaagccggtcgcttaa 99  Q
    ||||||||||||||| ||||||||  ||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||| ||||||||||    
T  23528092 gcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggtcgcttaa 23527993  T
Q  100 gcgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggggacttcttgagcattctaaaatatttc 199  Q
    ||||||||||||||||||||||||||||| ||||| ||||||| |||||||||| |||||| ||||| ||||||||||||||||| ||||  ||  |       
T  23527992 gcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttagtgcatgaggggacttcttgagcgttctttaacttcct 23527894  T
Q  200 ctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaat-tggttgatgttagtgaatttttgagatgattgagta 298  Q
    |||||||| |||||||||| || |||||| |  ||||||| |||||||| | |||| | | || || ||| ||||||| ||| || |||||| ||| ||     
T  23527893 ctttaactagtataaccctggtgtaggtaaccaaatcctattagaacaatccggtgtttggatatgattggtgttagtaaatgttggagatgtttgggtg 23527794  T
Q  299 tgaaatcaagtga------------atatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaat 386  Q
    ||||| |||||||            ||||||||  | | |||||  |||||||||||||||||||||||| |||||||||  | |||||||| || || |    
T  23527793 tgaaagcaagtgaatatgtatgtatatatataacatgtggaatgtgattgatgtatgtgcataattataaataattgtgtcag-tctggattatttgagt 23527695  T
Q  387 tttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgtatgtagatatacacaggt 449  Q
    | | ||||||||||||||||||| | |||||| || ||  ||||||||||||||||||||||||    
T  23527694 tgt-ggagtagtaagtcatatgatacatatgtagtggtcgagttgtatgtagatatacacaggt 23527632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 28889930 - 28890058
Alignment:
Q  1 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaag 100  Q
    |||||||||||||||| |||||||  |||||||| ||||||| |||||||||| |||||||||| ||||||||||||||||||||||  |||||||||||    
T  28889930 gcgaaaaaccattttgtttctgtccaaagttcgcccaagcgagccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaag 28890029  T
Q  101 cgaactagccgtcgcttaagcgaagtgag 129  Q
    |||  ||||||||||||||||||| ||||    
T  28890030 cgagatagccgtcgcttaagcgaactgag 28890058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 28896634 - 28896762
Alignment:
Q  1 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaag 100  Q
    |||||||||||||||| |||||||  |||||||| ||||||| |||||||||| |||||||||| ||||||||||||||||||||||  |||||||||||    
T  28896634 gcgaaaaaccattttgtttctgtccaaagttcgcccaagcgagccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaag 28896733  T
Q  101 cgaactagccgtcgcttaagcgaagtgag 129  Q
    |||  ||||||||||||||||||| ||||    
T  28896734 cgagatagccgtcgcttaagcgaactgag 28896762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 28909882 - 28910010
Alignment:
Q  1 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaag 100  Q
    |||||||||||||||| |||||||  |||||||| ||||||| |||||||||| |||||||||| ||||||||||||||||||||||  |||||||||||    
T  28909882 gcgaaaaaccattttgtttctgtccaaagttcgcccaagcgagccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaag 28909981  T
Q  101 cgaactagccgtcgcttaagcgaagtgag 129  Q
    |||  ||||||||||||||||||| ||||    
T  28909982 cgagatagccgtcgcttaagcgaactgag 28910010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 28931574 - 28931702
Alignment:
Q  1 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaag 100  Q
    |||||||||||||||| |||||||  |||||||| ||||||| |||||||||| |||||||||| ||||||||||||||||||||||  |||||||||||    
T  28931574 gcgaaaaaccattttgtttctgtccaaagttcgcccaagcgagccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaag 28931673  T
Q  101 cgaactagccgtcgcttaagcgaagtgag 129  Q
    |||  ||||||||||||||||||| ||||    
T  28931674 cgagatagccgtcgcttaagcgaactgag 28931702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 28946277 - 28946405
Alignment:
Q  1 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaag 100  Q
    |||||||||||||||| |||||||  |||||||| ||||||| |||||||||| |||||||||| ||||||||||||||||||||||  |||||||||||    
T  28946277 gcgaaaaaccattttgtttctgtccaaagttcgcccaagcgagccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaag 28946376  T
Q  101 cgaactagccgtcgcttaagcgaagtgag 129  Q
    |||  ||||||||||||||||||| ||||    
T  28946377 cgagatagccgtcgcttaagcgaactgag 28946405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 13 - 175
Target Start/End: Complemental strand, 19236410 - 19236250
Alignment:
Q  13 tttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgt 112  Q
    |||||||||| ||  | |||||| |||||| |||||||||| || ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  19236410 tttgattctgccaagaattcgcttaagcgagccgtgagcgacccataagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgt 19236311  T
Q  113 cgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggggac 175  Q
    |||||||||||| ||||  ||||  ||||| |||||||| | ||||||||| ||| |||||||    
T  19236310 cgcttaagcgaactgagtgttagatagcct-tttctgaa-tcttgcttcgtacactaggggac 19236250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 13 - 175
Target Start/End: Complemental strand, 22460666 - 22460506
Alignment:
Q  13 tttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgt 112  Q
    |||||||||| ||  | |||||| |||||| ||||||| || || |||||||  |||||||||||||||||||||| |||||||||||||||||||||||    
T  22460666 tttgattctgccaagaattcgcttaagcgagccgtgagtgacccataagcgaattgaacccagacctactgtaagctggtcgcttaagcgaactagccgt 22460567  T
Q  113 cgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggggac 175  Q
    |||||||||||| ||||  |||| |||||| |||||||| | ||||||||| ||| |||||||    
T  22460566 cgcttaagcgaactgagtgttagacagcct-tttctgaa-tcttgcttcgtacactaggggac 22460506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 13 - 175
Target Start/End: Complemental strand, 22467290 - 22467130
Alignment:
Q  13 tttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgt 112  Q
    |||||||||| ||  | |||||| |||||| |||||||||| || ||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||    
T  22467290 tttgattctgccaagaattcgcttaagcgagccgtgagcgacccataagcgaactgaacccagacctactgtaagctggtcggttaagcgaactagccgt 22467191  T
Q  113 cgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggggac 175  Q
    |||||||||| | ||||  |||| |||||| |||||||| | ||||||||| ||| |||||||    
T  22467190 cgcttaagcgtactgagtgttagacagcct-tttctgaa-tcttgcttcgtacactaggggac 22467130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 17 - 174
Target Start/End: Original strand, 18408491 - 18408647
Alignment:
Q  17 attctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgct 116  Q
    |||||| |||||||||||| ||||||  ||  |||||||||| ||||||| ||||||  || | ||||||||||||||||||||| ||||||||||||||    
T  18408491 attctgccagaagttcgcttaagcgagtcgcaagcgaaccgttagcgagcggaaccccaactttctgtaagccggtcgcttaagcaaactagccgtcgct 18408590  T
Q  117 taagcg-aagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgagggga 174  Q
    |||||| || ||| |||||||||||| |||| ||||| ||||| |||||||| ||||||    
T  18408591 taagcgaaaatga-ccttagtcagccactttttgaac-tttgcctcgtgcactagggga 18408647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 29 - 175
Target Start/End: Complemental strand, 34829578 - 34829432
Alignment:
Q  29 gttcgctcaagcgaaccgtgagcgaaccgtaagcgagct-gaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtg 127  Q
    |||||||||||||||| | ||||||||||| || ||||  ||||||  ||||  ||| ||| |||||||||||||| ||| || ||||||||||||| ||    
T  34829578 gttcgctcaagcgaactgcgagcgaaccgtgagtgagcgagaaccccaaccttttgtgagctggtcgcttaagcgagctacccttcgcttaagcgaactg 34829479  T
Q  128 agccttagtcagcctctttctgaacttttgcttcgtgcacgaggggac 175  Q
    ||||||||||| ||| ||||||||| |||||||||||||| |||||||    
T  34829478 agccttagtcaacctttttctgaac-tttgcttcgtgcactaggggac 34829432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 28933075 - 28933205
Alignment:
Q  1 gcgaaaaaccatttt-gattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaaccc-agacctactgtaagccggtcgctta 98  Q
    ||||||||||||||| | |||||||  ||||||||  |||||| |||||||||| |||||||||| |||||||| ||||||||||||||  ||||| |||    
T  28933075 gcgaaaaaccatttttgtttctgtccaaagttcgccaaagcgagccgtgagcgacccgtaagcgaactgaaccccagacctactgtaagttggtcgttta 28933174  T
Q  99 agcgaactagccgtcgcttaagcgaagtgag 129  Q
    |||||  ||||||| ||||||||||| ||||    
T  28933175 agcgagatagccgtggcttaagcgaactgag 28933205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 324 - 381
Target Start/End: Original strand, 22232436 - 22232493
Alignment:
Q  324 ttgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 381  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  22232436 ttgaatgaaattgatgtatgagcataattataattaatcgtgtatgttctggattgtt 22232493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 29 - 167
Target Start/End: Complemental strand, 20781240 - 20781102
Alignment:
Q  29 gttcgctcaagcgaaccgtgagcgaaccgtaagcgagct-gaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtg 127  Q
    ||||||| |||||||| | ||||||||||| |||||||  | |||   ||||  ||| ||| |||||||||||||| ||| |||||||||||||||| |     
T  20781240 gttcgcttaagcgaactgcgagcgaaccgtgagcgagcgaggacctcaaccttgtgtgagctggtcgcttaagcgagctacccgtcgcttaagcgaacta 20781141  T
Q  128 agccttagtcagcctctttctgaacttttgcttcgtgcac 167  Q
    ||  ||||||||||| |||||||| |||||||||||||||    
T  20781140 agtgttagtcagcctttttctgaa-ttttgcttcgtgcac 20781102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 167
Target Start/End: Complemental strand, 20772465 - 20772327
Alignment:
Q  29 gttcgctcaagcgaaccgtgagcgaaccgtaagcgagct-gaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtg 127  Q
    ||||||| |||||||| | ||||||||||| |||||||  | |||   ||||  ||| ||| |||||||||||||| ||| |||||||||||||||| ||    
T  20772465 gttcgcttaagcgaactgcgagcgaaccgtgagcgagcgaggacctcaaccttgtgtgagctggtcgcttaagcgagctacccgtcgcttaagcgaactg 20772366  T
Q  128 agccttagtcagcctctttctgaacttttgcttcgtgcac 167  Q
    ||  ||||||||||  ||||||||  ||||||||||||||    
T  20772365 agtgttagtcagcccttttctgaa-atttgcttcgtgcac 20772327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 167
Target Start/End: Original strand, 24930489 - 24930627
Alignment:
Q  29 gttcgctcaagcgaaccgtgagcgaaccgtaagcgagct-gaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtg 127  Q
    ||||||| |||||||| | ||||||||||| |||||||  | |||   ||||  ||| ||| |||||||||||||| |||  ||||||||||||||| ||    
T  24930489 gttcgcttaagcgaactgcgagcgaaccgtgagcgagcgaggacctcaaccttgtgtgagctggtcgcttaagcgagctactcgtcgcttaagcgaactg 24930588  T
Q  128 agccttagtcagcctctttctgaacttttgcttcgtgcac 167  Q
    ||  ||||||||||  |||||||| |||||||||||||||    
T  24930589 agtgttagtcagcccttttctgaa-ttttgcttcgtgcac 24930627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 22439321 - 22439370
Alignment:
Q  52 gaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagc 101  Q
    ||||| ||||||||| |||||||||| |||||||||||||||||||||||    
T  22439321 gaaccttaagcgagcagaacccagacttactgtaagccggtcgcttaagc 22439370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 20819682 - 20819618
Alignment:
Q  1 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaac-cgtgagcgaaccgtaagcga 64  Q
    ||||||||||||||||||||||||  || |||||||||||||||  ||||||||||||| |||||    
T  20819682 gcgaaaaaccattttgattctgtccaaatttcgctcaagcgaacttgtgagcgaaccgtgagcga 20819618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 20826782 - 20826718
Alignment:
Q  1 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaac-cgtgagcgaaccgtaagcga 64  Q
    ||||||||||||||||||||||||  || |||||||||||||||  ||||||||||||| |||||    
T  20826782 gcgaaaaaccattttgattctgtccaaatttcgctcaagcgaacttgtgagcgaaccgtgagcga 20826718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 339
Target Start/End: Original strand, 23112480 - 23112546
Alignment:
Q  272 ttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 339  Q
    |||||||||||  ||||||||||||||||||| |||||||| ||||| | | ||||||||| ||||||    
T  23112480 ttagtgaatttg-gagatgattgagtatgaaaccaagtgaacatatactatgttgaatgaacttgatg 23112546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 446
Target Start/End: Original strand, 22232568 - 22232625
Alignment:
Q  390 cggagtagtaagtcatatgaaat-atatgtgtagttaagttgtatgtagatatacaca 446  Q
    |||||| |||||||||||||||  |||||  | |||||||||||||||||||||||||    
T  22232568 cggagtcgtaagtcatatgaaaacatatgcattgttaagttgtatgtagatatacaca 22232625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 137; Significance: 2e-71; HSPs: 4)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 497 - 241
Alignment:
Q  1 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaag 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||  | |||||| ||||||||| |||||||||| | ||||||||| |||||         
T  497 gcgaaaaaccattttgattctgtcagaagttcgcttaagcgaaccgcaaacgaaccctaagcgagcagaacccagactttctgtaagccagtcgc----- 403  T
Q  101 cgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggggacttcttgagcattctaaaatatttcc 200  Q
                   ||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||     
T  402 ---------------ttaagcgaagtgaaccttagtcagcctctttctgaa-ttttgcttcgtgcacaaggggacatcttgagcattctaaaatatttct 319  T
Q  201 tttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtga 278  Q
    || ||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  318 ttcaacttgtataaactttgtataggtatcagaatcctactagaacacgctggtgatcgaattggttgatgttagtga 241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 7642 - 7386
Alignment:
Q  1 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaag 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||  | |||||| ||||||||| |||||||||| | ||||||||| |||||         
T  7642 gcgaaaaaccattttgattctgtcagaagttcgcttaagcgaaccgcaaacgaaccctaagcgagcagaacccagactttctgtaagccagtcgc----- 7548  T
Q  101 cgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggggacttcttgagcattctaaaatatttcc 200  Q
                   ||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||     
T  7547 ---------------ttaagcgaagtgaaccttagtcagcctctttctgaa-ttttgcttcgtgcacaaggggacatcttgagcattctaaaatatttct 7464  T
Q  201 tttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtga 278  Q
    || ||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7463 ttcaacttgtataaactttgtataggtatcagaatcctactagaacacgctggtgatcgaattggttgatgttagtga 7386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 124
Target Start/End: Complemental strand, 660 - 627
Alignment:
Q  91 gtcgcttaagcgaactagccgtcgcttaagcgaa 124  Q
    |||||||||||||| |||||||||||||||||||    
T  660 gtcgcttaagcgaagtagccgtcgcttaagcgaa 627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 124
Target Start/End: Complemental strand, 7805 - 7772
Alignment:
Q  91 gtcgcttaagcgaactagccgtcgcttaagcgaa 124  Q
    |||||||||||||| |||||||||||||||||||    
T  7805 gtcgcttaagcgaagtagccgtcgcttaagcgaa 7772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 14981 - 15121
Alignment:
Q  1 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14981 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacttactgtaagccggtcgcttaag 15080  T
Q  101 cgaactagccgtcgcttaagcgaagtgagccttagtcagcc 141  Q
    |||||||||||||||||||||||||||  ||||||||||||    
T  15081 cgaactagccgtcgcttaagcgaagtggaccttagtcagcc 15121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 126; Significance: 8e-65; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 41111402 - 41111214
Alignment:
Q  1 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccag-acctactgtaagccggtcgcttaa 99  Q
    ||||||||||||||| ||||||||  ||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||| ||||||||||    
T  41111402 gcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggtcgcttaa 41111303  T
Q  100 gcgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggggacttcttgagcattct 189  Q
    ||||||||||||||||||||||||||||| ||||| ||||||| |||||||||| |||||| ||||| ||||||||||||||||| ||||    
T  41111302 gcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttagtgcatgaggggacttcttgagcgttct 41111214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 13 - 175
Target Start/End: Complemental strand, 21705785 - 21705625
Alignment:
Q  13 tttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgt 112  Q
    |||||||||| ||  | |||||| |||||| |||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  21705785 tttgattctgccaagaattcgcttaagcgagccgtgagcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgt 21705686  T
Q  113 cgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggggac 175  Q
    |||||||||||| ||||  |||| |||||| |||||||| | ||||||||| ||| |||||||    
T  21705685 cgcttaagcgaactgagtgttagacagcct-tttctgaa-tcttgcttcgtacactaggggac 21705625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 13 - 175
Target Start/End: Complemental strand, 21710328 - 21710167
Alignment:
Q  13 tttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgt 112  Q
    |||||||||| ||  | |||||| |||||| ||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  21710328 tttgattctgccaagaattcgcttaagcgagccgtgagcgaaccataagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgt 21710229  T
Q  113 cgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggggac 175  Q
    |||||||||||| ||||  |||| |||||| |||| ||| | ||||||||| ||| |||||||    
T  21710228 cgcttaagcgaactgagtgttagacagcctttttccgaa-tcttgcttcgtacactaggggac 21710167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 13 - 175
Target Start/End: Original strand, 20851678 - 20851838
Alignment:
Q  13 tttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgt 112  Q
    |||||||||| ||  | |||||| |||||| |||||||||| || ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  20851678 tttgattctgccaagaattcgcttaagcgagccgtgagcgacccataagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgt 20851777  T
Q  113 cgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggggac 175  Q
    |||||||||||| ||||  |||| |||||| |||||||| | ||||||||| ||| |||||||    
T  20851778 cgcttaagcgaactgagtgttagacagcct-tttctgaa-tcttgcttcgtacactaggggac 20851838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 13 - 151
Target Start/End: Original strand, 20858305 - 20858442
Alignment:
Q  13 tttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgt 112  Q
    |||||||||| ||  | |||||| |||||| |||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  20858305 tttgattctgccaagaattcgcttaagcgagccgtgagcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgt 20858404  T
Q  113 cgcttaagcgaagtgagccttagtcagcctctttctgaa 151  Q
    |||||||||||| ||||  |||| |||||| ||||||||    
T  20858405 cgcttaagcgaactgagtgttagacagcct-tttctgaa 20858442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 28 - 241
Target Start/End: Complemental strand, 19961684 - 19961472
Alignment:
Q  28 agttcgctcaagcgaaccgtgagcgaaccgtaagcgagct-gaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagt 126  Q
    ||||||||| |||||||||  |||||||||| |||||||  ||| ||| || | ||||| || |||||||||||||| ||| || ||||||||||||  |    
T  19961684 agttcgctcgagcgaaccgcaagcgaaccgtgagcgagcgagaatccaaacttcctgta-gctggtcgcttaagcgagctacccttcgcttaagcgagat 19961586  T
Q  127 gagccttagtcagcctctttctgaacttttgcttcgtgcacgagggga-cttcttgagcattctaaaatatttcctttaacttgtataacccttgtatag 225  Q
    |||||||||||||||||| ||||||| |||||||||||||| |||||| | | ||||| ||| | |  | |||| |||| ||||||||||||||||||||    
T  19961585 gagccttagtcagcctctatctgaac-tttgcttcgtgcactaggggacccttttgagtatttttacgtgtttcttttagcttgtataacccttgtatag 19961487  T
Q  226 gtatcagaatcctact 241  Q
    | |||| |||||||||    
T  19961486 gcatca-aatcctact 19961472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 49 - 174
Target Start/End: Complemental strand, 18712223 - 18712098
Alignment:
Q  49 agcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaag-tgagccttagtcagcctctttc 147  Q
    |||| ||||| ||||||| ||||||  || | |||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||| | ||     
T  18712223 agcgtaccgttagcgagcggaaccccaactttctgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagatga-ccttagtcagccaccttt 18712125  T
Q  148 tgaacttttgcttcgtgcacgagggga 174  Q
    ||||||||||| |||||||| ||||||    
T  18712124 tgaacttttgcctcgtgcactagggga 18712098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 324 - 381
Target Start/End: Original strand, 20941657 - 20941714
Alignment:
Q  324 ttgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 381  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  20941657 ttgaatgaaattgatgtatgagcataattataattaattgtgtatgttctggattgtt 20941714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 333 - 449
Target Start/End: Complemental strand, 41111112 - 41110997
Alignment:
Q  333 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 431  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||| || || | ||||||||||||||||||| | |||||| || ||  ||||||    
T  41111112 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttgt-ggagtagtaagtcatatgatacatatgtagtggtcgagttgt 41111015  T
Q  432 atgtagatatacacaggt 449  Q
    ||||||||||||||||||    
T  41111014 atgtagatatacacaggt 41110997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 19 - 224
Target Start/End: Original strand, 22030298 - 22030504
Alignment:
Q  19 tctgtcagaagttcgctcaagcgaaccgtgagcgaa-ccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgctt 117  Q
    |||| ||||||||||||  ||||||||||||||||| || | ||||||| |||| |  ||   ||||||||| ||||||||||||| | |||| ||||||    
T  22030298 tctgccagaagttcgcttgagcgaaccgtgagcgaaacccttagcgagcagaacaccaactctctgtaagccagtcgcttaagcgagccagccttcgctt 22030397  T
Q  118 aagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgagggga-cttcttgagcattctaaaatatttcctttaacttgtataacc 216  Q
    ||||||||   | ||||||||||| |||| | || ||||||||| ||||| |||  | | | |||||||||||| ||| |||| || |||||||||||||    
T  22030398 aagcgaagaaggtcttagtcagccacttt-ttaatttttgcttcttgcactaggaaatccttttgagcattctataatgtttctttcaacttgtataacc 22030496  T
Q  217 cttgtata 224  Q
     |||||||    
T  22030497 tttgtata 22030504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 111 - 339
Target Start/End: Complemental strand, 11157554 - 11157328
Alignment:
Q  111 gtcgcttaagcgaag-tgagccttagtcagcctctttctgaacttttgcttcgtgcacgagggga-cttcttgagcattctaaaatatttcctttaactt 208  Q
    ||||||||||||||| ||| ||||||||| || |||| |||||||| || |||||||  |||||| | | |||||||||  ||||| |||| || |||||    
T  11157554 gtcgcttaagcgaagatga-ccttagtcaaccactttttgaacttt-gcctcgtgcattaggggatccttttgagcatttaaaaatgtttctttcaactt 11157457  T
Q  209 gtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaag 308  Q
    ||||||||||| ||||   |  | |||||||||  ||||   |||| |||||||| || ||  |||||||||||   |||||||||||||||||| ||||    
T  11157456 gtataacccttatatatacacta-aatcctactgaaacactttggtaatcgaattagtcgagtttagtgaatttga-agatgattgagtatgaaaccaag 11157359  T
Q  309 tgaatatataatttattgaatgaaattgatg 339  Q
    |||| ||||| | | ||||||||| ||||||    
T  11157358 tgaacatatactatgttgaatgaacttgatg 11157328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 376
Target Start/End: Original strand, 20438224 - 20438327
Alignment:
Q  272 ttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgtt 371  Q
    |||||||||||  ||||||||||||||||||| |||||||| ||||| | | ||||||||| || ||| ||  |  | ||||| ||||||||||||| ||    
T  20438224 ttagtgaatttg-gagatgattgagtatgaaaccaagtgaacatatactatgttgaatgaactttatgcattagtttgattatgattaattgtgtatttt 20438322  T
Q  372 ctgga 376  Q
    |||||    
T  20438323 ctgga 20438327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 446
Target Start/End: Complemental strand, 23631200 - 23631145
Alignment:
Q  391 ggagtagtaagtcatatgaaatatatgtgtagttaagttgtatgtagatatacaca 446  Q
    ||||| ||||||||||| | |||||||  | |||||||||||||||||||||||||    
T  23631200 ggagttgtaagtcatattatatatatgcattgttaagttgtatgtagatatacaca 23631145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 446
Target Start/End: Original strand, 20941789 - 20941846
Alignment:
Q  390 cggagtagtaagtcatatgaaat-atatgtgtagttaagttgtatgtagatatacaca 446  Q
    |||||| |||||||||||||||  |||||  | |||||||||||||||||||||||||    
T  20941789 cggagttgtaagtcatatgaaaacatatgcattgttaagttgtatgtagatatacaca 20941846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 20045382 - 20045414
Alignment:
Q  91 gtcgcttaagcgaactagccgtcgcttaagcga 123  Q
    ||||||||||||||||| |||||||||||||||    
T  20045382 gtcgcttaagcgaactacccgtcgcttaagcga 20045414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 18 - 337
Target Start/End: Original strand, 81764 - 82082
Alignment:
Q  18 ttctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgctt 117  Q
    ||||| |||||||||||| ||||||||||| ||||||| || |||||||  ||||   ||   ||||||| ||||||||||||||| | |||||||||||    
T  81764 ttctgccagaagttcgcttaagcgaaccgtaagcgaactgttagcgagcgaaacctcaactctctgtaagtcggtcgcttaagcgagccagccgtcgctt 81863  T
Q  118 aagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgagggga-cttcttgagcattctaaaatatttcctttaacttgtataacc 216  Q
    |||||||||  | ||||||||||| |||| |||| ||||||||||| ||| |||| | | | ||||||||| |||||| |||| || |||||||||||||    
T  81864 aagcgaagtaggtcttagtcagccactttttgaa-ttttgcttcgtacaccagggaatccttttgagcattttaaaatgtttctttcaacttgtataacc 81962  T
Q  217 cttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatata 316  Q
    |||||||| | | | ||||||||||  ||||   ||||  |||||||||||||  |||||||||||| || ||| |||||||||||| ||||||||||||    
T  81963 cttgtatatgca-ctgaatcctacttaaacacattggtagtcgaattggttgaatttagtgaattttggatatgtttgagtatgaaaccaagtgaatata 82061  T
Q  317 taatttattgaatgaaattga 337  Q
    || | | ||||||||| ||||    
T  82062 tattatgttgaatgaacttga 82082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 13 - 167
Target Start/End: Original strand, 80036 - 80189
Alignment:
Q  13 tttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgt 112  Q
    |||||||||| ||  | |||||| |||||| |||||||||| |||||||||| ||||||||||||||||||||||  |||||||||||||| ||||||||    
T  80036 tttgattctgccaagaattcgcttaagcgagccgtgagcgacccgtaagcgaactgaacccagacctactgtaagatggtcgcttaagcgagctagccgt 80135  T
Q  113 cgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcac 167  Q
    |||||||||||| ||||  ||||||||||| |||||||||  |||||||||||||    
T  80136 cgcttaagcgaactgagtgttagtcagcctttttctgaac-cttgcttcgtgcac 80189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 49 - 229
Target Start/End: Complemental strand, 30374 - 30194
Alignment:
Q  49 agcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttct 148  Q
    |||||||||| |||||||  |||| | || | ||||||||||||||||||||||| | | || |||||||||||||||||||||||||||||| ||||||    
T  30374 agcgaaccgtgagcgagcgaaacctaaactttctgtaagccggtcgcttaagcgagccaaccttcgcttaagcgaagtgagccttagtcagccactttct 30275  T
Q  149 gaacttttgcttcgtgcacgagggga-cttcttgagcattctaaaatatttcctttaacttgtataacccttgtataggtat 229  Q
    ||| ||||||||||||||| |||||| | | |||||||||||||||| |||| || ||||||||||||||||||||||||||    
T  30274 gaa-ttttgcttcgtgcactaggggacccttttgagcattctaaaatgtttctttcaacttgtataacccttgtataggtat 30194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 230 - 381
Target Start/End: Original strand, 7517 - 7667
Alignment:
Q  230 cagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaat 329  Q
    ||||||||||||| || |  | |||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||| | | ||||||    
T  7517 cagaatcctactaaaatactccggtgatcgaattagttga-gttagtgaattttggagatgattgagtatgaaatcaagtgaatatatagtatgttgaat 7615  T
Q  330 gaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 381  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||| |||||    
T  7616 gaaattgatgtatgagcataattataattaattgggtatgttctgggttgtt 7667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 446
Target Start/End: Original strand, 7742 - 7798
Alignment:
Q  390 cggagtagtaagtcatatgaaatatatgtgtagttaagttgtatgtagatatacaca 446  Q
    |||||| | ||||||||||||| |||||  | |||||||||||||||||||||||||    
T  7742 cggagttgcaagtcatatgaaacatatgcattgttaagttgtatgtagatatacaca 7798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 13 - 175
Target Start/End: Original strand, 4217 - 4377
Alignment:
Q  13 tttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgt 112  Q
    |||||||||| ||  | |||||| |||||| |||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |    
T  4217 tttgattctgccaagaattcgcttaagcgagccgtgagcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccat 4316  T
Q  113 cgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggggac 175  Q
    |||||||||||| ||||| ||||||||||| |||||||| | ||||||||||||| |||||||    
T  4317 cgcttaagcgaactgagcgttagtcagcct-tttctgaa-tcttgcttcgtgcactaggggac 4377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 79; Significance: 9e-37; HSPs: 3)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 51 - 364
Target Start/End: Complemental strand, 65577 - 65265
Alignment:
Q  51 cgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttctga 150  Q
    |||||||| ||||||| ||||||  ||   ||||||||||||||||||||||||| ||||||| |||||||| ||    |||||||||||| |||| |||    
T  65577 cgaaccgttagcgagcggaaccccaactctctgtaagccggtcgcttaagcgaaccagccgtcacttaagcggagaagaccttagtcagccactttttga 65478  T
Q  151 acttttgcttcgtgcacgagggga-cttcttgagcattctaaaatatttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaag 249  Q
    | |||||| |||||||| |||||| | | |||| |||| |||||| |||| || ||||||||||||  || |||| | | | ||||||||||| ||||      
T  65477 a-ttttgcctcgtgcactaggggatccttttgaacattttaaaatgtttctttcaacttgtataacttttatatatgca-ctgaatcctactaaaacaca 65380  T
Q  250 ctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcata 349  Q
     |||| |||||||||||| |  |||||||||||| ||  ||||||||||||||| |||||||||||||| | | ||||||||| |||||| ||  | ||     
T  65379 ttggtaatcgaattggttaagtttagtgaattttggatttgattgagtatgaaaccaagtgaatatatactatgttgaatgaacttgatgcattagtatg 65280  T
Q  350 attataattaattgt 364  Q
    ||||| |||||||||    
T  65279 attattattaattgt 65265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 1572 - 1467
Alignment:
Q  19 tctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgctta 118  Q
    |||||||||||||| || ||||||||||||||||| ||   ||||||| ||||||  ||   |||| |||||||||||||||||| | |||| |||||||    
T  1572 tctgtcagaagttcacttaagcgaaccgtgagcgagccagtagcgagcggaaccccaactctctgtcagccggtcgcttaagcgagccagccttcgctta 1473  T
Q  119 agcgaa 124  Q
    ||||||    
T  1472 agcgaa 1467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 318
Target Start/End: Complemental strand, 1336 - 1274
Alignment:
Q  256 atcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatatata 318  Q
    ||||||||||||||  ||||||| |||| || |||||||||||||||| |||||||| |||||    
T  1336 atcgaattggttgaatttagtgagttttggatatgattgagtatgaaaccaagtgaacatata 1274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 878 - 542
Alignment:
Q  1 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaag 100  Q
    |||||||| |||||  ||||||||||||||||||| ||||||||||  |||||| ||| ||||||   |||||  ||   ||||||||||||||||||||    
T  878 gcgaaaaatcatttccattctgtcagaagttcgcttaagcgaaccgcaagcgaaacgttagcgagggaaaccccaactctctgtaagccggtcgcttaag 779  T
Q  101 cgaactagccgtcgcttaagcgaag-tgagccttagtcagcctctttctgaacttttgcttcgtgcacgagggga-cttcttgagcattctaaaatattt 198  Q
    ||||| ||||||||||||||||||| ||| |||||||||||| |||| ||||| ||||| |||||||  |||||| | | |||||||||  ||||| |||    
T  778 cgaaccagccgtcgcttaagcgaagatga-ccttagtcagccactttttgaac-tttgcctcgtgcattaggggatccttttgagcattaaaaaatgttt 681  T
Q  199 cctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagta 298  Q
    | || || |||||||||| || |||| | | | ||||||||||  ||||   |||| |||||||| |||||  |||||||| |||  |||||||||||||    
T  680 ctttcaatttgtataacctttatatatgca-ctgaatcctactgaaacactttggtaatcgaattagttgagtttagtgaa-tttgaagatgattgagta 583  T
Q  299 tgaaatcaagtgaatatataatttattgaatgaaattgatg 339  Q
    | | | |||||||| ||||| | | ||||||||| ||||||    
T  582 tcataccaagtgaacatatactatgttgaatgaacttgatg 542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 923 - 875
Alignment:
Q  17 attctgtcagaagttcgctcaagcgaaccgtgagcgaa-ccgtaagcga 64  Q
    ||||||||||| | |||||||||||||||||||||||| ||||||||||    
T  923 attctgtcagacgctcgctcaagcgaaccgtgagcgaacccgtaagcga 875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 10822 - 10679
Alignment:
Q  1 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |           |||||||| |||||||||| ||||||||||||||||||||||    
T  10822 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccct-----------aagcgagcagaacccagacttactgtaagccggtcgcttaag 10734  T
Q  101 cgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttctgaacttt 155  Q
    ||| ||||||||||||||||||||||    ||||||||||| |||| ||||||||    
T  10733 cgagctagccgtcgcttaagcgaagttgatcttagtcagccactttttgaacttt 10679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 81 - 339
Target Start/End: Complemental strand, 116308 - 116052
Alignment:
Q  81 ctgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaag-tgagccttagtcagcctctttctgaacttttgcttcgtgcacgagggga-cttc 178  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||  ||| ||||| ||||| |||||||| |||||| | |     
T  116308 ctgtaagccggtcgcttaagcgaaccagccgtcgcttaagcgaagatga-ccttagtcagccattttttgaac-tttgcctcgtgcactaggggatcctt 116211  T
Q  179 ttgagcattctaaaatatttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtga 278  Q
    ||||| ||| |||||| |||| || ||| ||||||||| || ||||   | | ||||||||||  ||||   |||| |||||||| |||||  |||||||    
T  116210 ttgagtattttaaaatgtttctttcaacctgtataacctttatatacaca-ctgaatcctactgaaacaccttggtaatcgaattagttgagtttagtga 116112  T
Q  279 atttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 339  Q
    | |||||||||||||||||||||||||||||||| ||||| | | ||||||||| ||||||    
T  116111 a-ttttgagatgattgagtatgaaatcaagtgaacatatactatgttgaatgaacttgatg 116052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 49 - 224
Target Start/End: Original strand, 129217 - 129393
Alignment:
Q  49 agcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttct 148  Q
    |||||||||| ||||||| ||||||  || | |||| |||||||||||||||||| | |||||||||||||||||||   | ||||||||||| |||| |    
T  129217 agcgaaccgttagcgagcggaaccccaactttctgtgagccggtcgcttaagcgagccagccgtcgcttaagcgaagaaggtcttagtcagccacttttt 129316  T
Q  149 gaacttttgcttcgtgcacgagggga-cttcttgagca-ttctaaaatatttcctttaacttgtataacccttgtata 224  Q
    ||| ||||||||||||||| |||||| | | ||||||| || | |||| ||||||| ||||||||||||| |||||||    
T  129317 gaa-ttttgcttcgtgcactaggggatccttttgagcatttttgaaatgtttccttcaacttgtataacctttgtata 129393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 116366 - 116325
Alignment:
Q  12 ttttgattctgtcagaagttcgctcaagcgaaccgtgagcga 53  Q
    |||| ||||||||||||||||||||||||||||||| |||||    
T  116366 ttttcattctgtcagaagttcgctcaagcgaaccgttagcga 116325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0924 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: scaffold0924
Description:

Target: scaffold0924; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 1347 - 1446
Alignment:
Q  1 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaag 100  Q
    ||||||||| ||||||||||||||  ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||    
T  1347 gcgaaaaacaattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaag 1446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 1322 - 1117
Alignment:
Q  19 tctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgctta 118  Q
    ||||||||||||||||| |||||||||||||  || || | ||||||| ||| ||  ||   |||| |||||||||||||||||| | ||||||||||||    
T  1322 tctgtcagaagttcgcttaagcgaaccgtgattgagccattagcgagcggaaacccaactctctgtgagccggtcgcttaagcgagccagccgtcgctta 1223  T
Q  119 agcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgagggga-cttcttgagcattctaaaatatttcctttaacttgtataaccc 217  Q
    ||||||| | | ||||||||||| |||| |||| ||||||||||||||| |||||| | | ||||||||| |||||| |||| || |||||||||||||     
T  1222 agcgaagagggtcttagtcagccactttttgaa-ttttgcttcgtgcactaggggatccttttgagcattttaaaatgtttctttcaacttgtataacct 1124  T
Q  218 ttgtata 224  Q
    |||||||    
T  1123 ttgtata 1117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 16293 - 16121
Alignment:
Q  1 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaag 100  Q
    |||||||| || ||| ||| ||||||||||||||| || |||||||  |||||||||| ||||||| ||||||  || | ||||||||||||||||||||    
T  16293 gcgaaaaatcaatttcattatgtcagaagttcgcttaaccgaaccgcaagcgaaccgttagcgagcggaaccccaactttctgtaagccggtcgcttaag 16194  T
Q  101 cgaactagccgtcgcttaagcgaag-tgagccttagtcagcctctttctgaacttttgcttcgtgcacgagggga 174  Q
    ||| ||| ||||||||||||||||| ||| |||||||||||| |||| ||||| ||||| |||||||| ||||||    
T  16193 cgagctaaccgtcgcttaagcgaagatga-ccttagtcagccactttttgaac-tttgcctcgtgcactagggga 16121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 71; Significance: 6e-32; HSPs: 3)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 29 - 241
Target Start/End: Original strand, 493588 - 493800
Alignment:
Q  29 gttcgctcaagcgaaccgtgagcgaaccgtaagcgagct-gaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtg 127  Q
    |||||||||||||||| ||||||||||||| |||||||  |||||   ||||  |||  || |||||||||||||| ||| || ||||||||||||| ||    
T  493588 gttcgctcaagcgaactgtgagcgaaccgtgagcgagcgagaacctcaaccttttgtgtgctggtcgcttaagcgagctacccttcgcttaagcgaactg 493687  T
Q  128 agccttagtcagcctctttctgaacttttgcttcgtgcacgagggga-cttcttgagcattctaaaatatttcctttaacttgtataacccttgtatagg 226  Q
    ||||||||||||||| |||||||||  ||||||||||||| |||||| | | ||||| ||| | |||| |||| |||| |||||||||| ||||||||||    
T  493688 agccttagtcagcctttttctgaac-cttgcttcgtgcactaggggacccttttgagtatttttaaatgtttcttttagcttgtataactcttgtatagg 493786  T
Q  227 tatcagaatcctact 241  Q
     |||| |||||||||    
T  493787 catca-aatcctact 493800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 333 - 450
Target Start/End: Original strand, 174440 - 174557
Alignment:
Q  333 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatgaaatatatgt-gtagttaagttgt 431  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| | | || ||||| |||||||||| ||||| ||||||  ||||  | ||||    
T  174440 attgatgtatgtgcataattataaataattgtgtatgttctggattgtttg-agttgcggagcagtaagtcatttgaaaaatatgtaatagtcgaattgt 174538  T
Q  432 atgtagatatacacaggtt 450  Q
    ||||||| ||||| |||||    
T  174539 atgtagagatacaaaggtt 174557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 224
Target Start/End: Complemental strand, 525204 - 525062
Alignment:
Q  81 ctgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgagggga--cttc 178  Q
    ||||||| ||||||||||||||||| |||| ||||||||||||||   ||||| ||||||| | || |||  ||||| ||| ||||| |||| |  | ||    
T  525204 ctgtaagacggtcgcttaagcgaaccagccttcgcttaagcgaagaaggccttggtcagccacattttga--ttttgtttcctgcactagggaatccatc 525107  T
Q  179 ttgagcattctaaaatatttcctttaacttgtataacccttgtata 224  Q
     |||||||||| |||| |||| || ||||||||||||| |||||||    
T  525106 -tgagcattctgaaatgtttctttcaacttgtataacctttgtata 525062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0476 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0476
Description:

Target: scaffold0476; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 30 - 152
Target Start/End: Original strand, 3854 - 3976
Alignment:
Q  30 ttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtgag 129  Q
    |||||| ||||||||||  ||||||||||||  |||| ||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||       
T  3854 ttcgcttaagcgaaccgcaagcgaaccgtaattgagcagaacccagactcactgtaagccggtcgcttaagcgaactagacgtcgcttaagcgaagttga 3953  T
Q  130 ccttagtcagcctctttctgaac 152  Q
    |||||||||||| |||| |||||    
T  3954 ccttagtcagccactttttgaac 3976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0232 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0232
Description:

Target: scaffold0232; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 19 - 224
Target Start/End: Original strand, 18961 - 19166
Alignment:
Q  19 tctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgctta 118  Q
    ||||||||||||||||| ||||||||||||||||| || | ||||||| ||||||  ||   |||| |||| ||||||||| ||| | ||||||| | ||    
T  18961 tctgtcagaagttcgcttaagcgaaccgtgagcgagccattagcgagcggaaccccaactgtctgtgagccagtcgcttaaccgagccagccgtctccta 19060  T
Q  119 agcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgagggga-cttcttgagcattctaaaatatttcctttaacttgtataaccc 217  Q
    ||||||| | | ||||||||||| |||| |||| ||||||||||||||| |||||| | | ||||||||| |||||| |||| || ||||| |||||||     
T  19061 agcgaagagggtcttagtcagccactttttgaa-ttttgcttcgtgcactaggggatccttttgagcattttaaaatgtttctttcaacttatataacct 19159  T
Q  218 ttgtata 224  Q
    |||||||    
T  19160 ttgtata 19166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 29 - 193
Target Start/End: Complemental strand, 17661 - 17497
Alignment:
Q  29 gttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtga 128  Q
    ||||||||||| || |||  ||||||| || |||||||  |||||| || | ||||||||||||||||||||||| | |||| |||||||||||||||||    
T  17661 gttcgctcaagagacccgcaagcgaactgtgagcgagcgaaacccaaactttctgtaagccggtcgcttaagcgagccagccttcgcttaagcgaagtga 17562  T
Q  129 gccttagtcagcctctttctgaacttttgcttcgtgcacgagggga-cttcttgagcattctaaaa 193  Q
    ||||| ||||||| ||||||||| ||||| ||||||||| ||| || | | |||||||||||||||    
T  17561 gccttggtcagccactttctgaa-ttttgtttcgtgcactaggcgagccttttgagcattctaaaa 17497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 134960 - 134867
Alignment:
Q  13 tttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaact 106  Q
    |||||||||||||  | |||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  134960 tttgattctgtcaagaattcgcttaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaact 134867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0310 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 49 - 173
Target Start/End: Complemental strand, 6983 - 6861
Alignment:
Q  49 agcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaag-tgagccttagtcagcctctttc 147  Q
    |||||| ||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||| |||||||| ||||     
T  6983 agcgaatcgtaagcgagcagaacccagacttactgtaagccggtcgcttaagcgagctagccgtcgcttaagcgaagatga-cctcagtcagccacttt- 6886  T
Q  148 tgaacttttgcttcgtgcacgagggg 173  Q
    ||||| ||||| |||||||| |||||    
T  6885 tgaac-tttgcctcgtgcactagggg 6861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 591 - 752
Alignment:
Q  1 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaag 100  Q
    |||||||| || ||| ||||||||||||||||||||||||||||||| |||||       ||||    |||||  || | ||||||||||||||||||||    
T  591 gcgaaaaatcaatttcattctgtcagaagttcgctcaagcgaaccgtcagcga-------gcga----aaccccaactttctgtaagccggtcgcttaag 679  T
Q  101 cgaactagccgtcgcttaagcgaag-tgagccttagtcagcctctttctgaacttttgcttcgtgcacgagggga 174  Q
    ||||||||||||||||||||||||| ||| |||||||||||| |||| ||||| ||||| |||||||| ||||||    
T  680 cgaactagccgtcgcttaagcgaagatga-ccttagtcagccactttttgaac-tttgcgtcgtgcactagggga 752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 90 - 174
Target Start/End: Original strand, 7605 - 7688
Alignment:
Q  90 ggtcgcttaagcgaactagccgtcgcttaagcgaag-tgagccttagtcagcctctttctgaacttttgcttcgtgcacgagggga 174  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||| ||||| ||||| |||||||| ||||||    
T  7605 ggtcgcttaagcgaactagccgtcgcttaagcgaagatga-ccttagtcagccactttttgaac-tttgcgtcgtgcactagggga 7688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0453 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 29 - 175
Target Start/End: Original strand, 11112 - 11258
Alignment:
Q  29 gttcgctcaagcgaaccgtgagcgaaccgtaagcgagct-gaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtg 127  Q
    |||||||||||||||| ||||||||||||| |||||||  |||||   ||||  ||| ||| ||||||||||||||  || || ||||||||||||| ||    
T  11112 gttcgctcaagcgaactgtgagcgaaccgtgagcgagcgagaaccacaaccttttgtgagctggtcgcttaagcgagatacccttcgcttaagcgaactg 11211  T
Q  128 agccttagtcagcctctttctgaacttttgcttcgtgcacgaggggac 175  Q
    ||||||||||||||| |||||||||  ||||||||||||| |||||||    
T  11212 agccttagtcagcctttttctgaac-cttgcttcgtgcactaggggac 11258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 121406 - 121200
Alignment:
Q  19 tctgtcagaagttcgctcaagcgaaccgtgagcgaaccg-taagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgctt 117  Q
    |||| ||||||||||||  |||||||||||||||||||  | ||||||| |||| |  ||   |||||||||||| |||||||||| | |||| ||||||    
T  121406 tctgccagaagttcgcttgagcgaaccgtgagcgaaccccttagcgagcagaacaccaactctctgtaagccggttgcttaagcgagccagccttcgctt 121307  T
Q  118 aagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgagggga-cttcttgagcattctaaaatatttcctttaacttgtataacc 216  Q
    ||||||||   | ||||||||||| |||| || ||||||||||||||||| |||| | | | ||||||||| |||||| |||| || |||||||||||||    
T  121306 aagcgaagaaggtcttagtcagccactttttg-acttttgcttcgtgcactagggaatccttttgagcattttaaaatgtttctttcaacttgtataacc 121208  T
Q  217 cttgtata 224  Q
     |||||||    
T  121207 tttgtata 121200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 132283 - 132077
Alignment:
Q  19 tctgtcagaagttcgctcaagcgaaccgtgagcgaaccg-taagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgctt 117  Q
    |||| ||||||||||||  |||||||||||||||||||  | ||||||| |||| |  ||   |||||||||||| |||||||||| | |||| ||||||    
T  132283 tctgccagaagttcgcttgagcgaaccgtgagcgaaccccttagcgagcagaacaccaactctctgtaagccggttgcttaagcgagccagccttcgctt 132184  T
Q  118 aagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgagggga-cttcttgagcattctaaaatatttcctttaacttgtataacc 216  Q
    ||||||||   | ||||||||||| |||| || ||||||||||||||||| |||| | | | ||||||||| |||||| |||| || |||||||||||||    
T  132183 aagcgaagaaggtcttagtcagccactttttg-acttttgcttcgtgcactagggaatccttttgagcattttaaaatgtttctttcaacttgtataacc 132085  T
Q  217 cttgtata 224  Q
     |||||||    
T  132084 tttgtata 132077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 84 - 339
Target Start/End: Original strand, 15604 - 15856
Alignment:
Q  84 taagccggtcgcttaagcgaactagccgtcgcttaagcgaag-tgagccttagtcagcctctttctgaacttttgcttcgtgcacgagggga-cttcttg 181  Q
    |||| ||||||||||||||||| | ||||||||||||||||| ||| |||||||||||| |||| ||||| ||||| |||||||| ||| || | | |||    
T  15604 taagacggtcgcttaagcgaaccaaccgtcgcttaagcgaagatga-ccttagtcagccacttt-tgaac-tttgcctcgtgcactaggagatccttttg 15700  T
Q  182 agcattctaaaatatttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatt 281  Q
    ||||||  ||||| |||| || ||||||||||||| || |||| | | | ||||| ||||  ||||   |||| |||||||| |||||  |||||||| |    
T  15701 agcatttaaaaatgtttctttcaacttgtataacctttatatatgca-ctgaatcatactgaaacactttggtaatcgaattagttgagtttagtgaa-t 15798  T
Q  282 tttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 339  Q
    || ||||||||||||||||||| |||||||| ||||| | | ||||||||| ||||||    
T  15799 ttggagatgattgagtatgaaaccaagtgaacatatactatgttgaatgaacttgatg 15856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 15532 - 15586
Alignment:
Q  1 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaac 55  Q
    |||||||| |||||  ||| ||||||||||||||||||||||||||| |||||||    
T  15532 gcgaaaaatcatttccattatgtcagaagttcgctcaagcgaaccgttagcgaac 15586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0483 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0483
Description:

Target: scaffold0483; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 28 - 241
Target Start/End: Original strand, 11569 - 11782
Alignment:
Q  28 agttcgctcaagcgaaccgtgagcgaaccgtaagcgagct-gaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagt 126  Q
    ||||||||| |||||||||  ||||| |||| |||||||  ||| ||| || | ||||| || |||||||||||||||||| || ||||||||||||  |    
T  11569 agttcgctcgagcgaaccgcaagcgatccgtgagcgagcgagaatccaaacttcctgta-gctggtcgcttaagcgaactacccttcgcttaagcgagct 11667  T
Q  127 gagccttagtcagcctctttctgaacttttgcttcgtgcacgagggga-cttcttgagca-ttctaaaatatttcctttaacttgtataacccttgtata 224  Q
    |||||||||||||||||| ||||||| |||||||| ||||| |||||| | | ||||| | || | || | |||| |||| |||||||||||||||||||    
T  11668 gagccttagtcagcctctatctgaac-tttgcttcatgcactaggggacccttttgagtattttttaagtttttcttttagcttgtataacccttgtata 11766  T
Q  225 ggtatcagaatcctact 241  Q
    || |||| |||||||||    
T  11767 ggcatca-aatcctact 11782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0261 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 29 - 241
Target Start/End: Original strand, 24131 - 24342
Alignment:
Q  29 gttcgctcaagcgaaccgtgagcgaaccgtaagcgagct-gaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtg 127  Q
    |||||||||||||||| | |||||||| || ||| |||  ||| ||| ||||  ||| ||| |||||||||||||| ||| || ||||||||||||  ||    
T  24131 gttcgctcaagcgaactgcgagcgaactgtgagcaagcgagaatcca-accttttgtgagctggtcgcttaagcgagctatccttcgcttaagcgagatg 24229  T
Q  128 agccttagtcagcctctttctgaacttttgcttcgtgcacgagggga-cttcttgagcattctaaaatatttcctttaacttgtataacccttgtatagg 226  Q
    |||||||||||| |||||||||||| |||||||||||||| |||||| | | |||||  || | || | |||| |||| |||||||||||||||| ||||    
T  24230 agccttagtcagtctctttctgaac-tttgcttcgtgcactaggggacccttttgagtgtttttaagtgtttcttttagcttgtataacccttgtgtagg 24328  T
Q  227 tatcagaatcctact 241  Q
     |||| |||||||||    
T  24329 catca-aatcctact 24342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0261; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 24070 - 24106
Alignment:
Q  29 gttcgctcaagcgaaccgtgagcgaaccgtaagcgag 65  Q
    ||||||| |||||||||||||||||||||||||||||    
T  24070 gttcgcttaagcgaaccgtgagcgaaccgtaagcgag 24106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 49 - 139
Target Start/End: Original strand, 4191 - 4281
Alignment:
Q  49 agcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtgagccttagtcag 139  Q
    |||||||||||| ||||| |||||||||| |||||||||| | ||||||||||||||||| |||||||||||||||||   ||||||||||    
T  4191 agcgaaccgtaatcgagcagaacccagacttactgtaagctgatcgcttaagcgaactagacgtcgcttaagcgaagttgaccttagtcag 4281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 329 - 381
Target Start/End: Original strand, 17972 - 18024
Alignment:
Q  329 tgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 381  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  17972 tgaaattgatgtatgagcataattataattaattgtgtatgttctggattgtt 18024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 329 - 381
Target Start/End: Original strand, 23605 - 23657
Alignment:
Q  329 tgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 381  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23605 tgaaattgatgtatgagcataattataattaattgtgtatgttctggattgtt 23657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 49 - 155
Target Start/End: Original strand, 34908 - 35014
Alignment:
Q  49 agcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaag-tgagccttagtcagcctctttc 147  Q
    |||||||||| ||||||| |||||   || | |||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||| ||||     
T  34908 agcgaaccgtcagcgagcggaacctcaactttctgtaagccggtcgcttaagcgaactagccatcgcttaagcgaagatga-ccttagtcagccactttt 35006  T
Q  148 tgaacttt 155  Q
    ||||||||    
T  35007 tgaacttt 35014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1061 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold1061
Description:

Target: scaffold1061; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 107 - 318
Target Start/End: Complemental strand, 1817 - 1607
Alignment:
Q  107 agccgtcgcttaagcgaag-tgagccttagtcagcctctttctgaacttttgcttcgtgcacgagggga-cttcttgagcattctaaaatatttccttta 204  Q
    ||||||||||||||||||| ||| |||||||||||| |||| |||| |||||| |||||||| |||||| | | ||||||||| |||||| |||| || |    
T  1817 agccgtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ttttgcctcgtgcactaggggatccttttgagcattttaaaatgtttctttca 1720  T
Q  205 acttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaat 304  Q
    |||||||| ||| || ||||     | |||||||||| |||||   |||| ||||| ||||||||  |||||||||||| || || | |||||||||||     
T  1719 acttgtatgacctttatatatacccctgaatcctact-gaacacattggtaatcgagttggttgaatttagtgaattttggatatcagtgagtatgaaac 1621  T
Q  305 caagtgaatatata 318  Q
    ||||||||||||||    
T  1620 caagtgaatatata 1607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 324 - 381
Target Start/End: Original strand, 1527 - 1584
Alignment:
Q  324 ttgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 381  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  1527 ttgaatgaaattgatgtatgagcataattttaattaattgtgtatgttctggattgtt 1584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 446
Target Start/End: Original strand, 1659 - 1716
Alignment:
Q  390 cggagtagtaagtcatatgaaat-atatgtgtagttaagttgtatgtagatatacaca 446  Q
    |||||| |||||||||||||||  |||||  | |||||||||||||||||||||||||    
T  1659 cggagttgtaagtcatatgaaaacatatgcattgttaagttgtatgtagatatacaca 1716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 49 - 339
Target Start/End: Original strand, 102499 - 102787
Alignment:
Q  49 agcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaag-tgagccttagtcagcctctttc 147  Q
    |||||||||| ||||||| ||||||  || | ||||||| ||||||||||||||||| |||| |||||||||||||| ||| |||||||| ||| ||||     
T  102499 agcgaaccgtcagcgagcggaaccccaactttctgtaagtcggtcgcttaagcgaaccagccatcgcttaagcgaagatga-ccttagtcggccactttt 102597  T
Q  148 tgaacttttgcttcgtgcacgagggga-cttcttgagcattctaaaatatttcctttaacttgtataacccttgtataggtatcagaatcctactagaac 246  Q
    |||||  |||| |||||||| |||||| | | ||||| ||| |||||  |||| || ||| ||||||||| || ||||   | | || ||||||   |||    
T  102598 tgaac-cttgcctcgtgcactaggggatccttttgagtattttaaaaggtttctttcaacctgtataacctttatatacaca-ctgagtcctacagaaac 102695  T
Q  247 aagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 339  Q
    |   |||| |||||||| |||||  ||||| || ||| ||||||||||||||||||| |||||||| ||||| | | ||||||||| ||||||    
T  102696 accttggtaatcgaattagttgagtttagt-aaatttggagatgattgagtatgaaaccaagtgaacatatactatgttgaatgaacttgatg 102787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 216
Target Start/End: Complemental strand, 51749 - 51552
Alignment:
Q  19 tctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgctta 118  Q
    |||| |||||||||||| |||||||||||  ||||||||| |||||||  ||||   ||   || | ||| |||| ||||||||| | ||||||||||||    
T  51749 tctgccagaagttcgcttaagcgaaccgtatgcgaaccgttagcgagcgaaacctcaactctctatgagctggtcacttaagcgagccagccgtcgctta 51650  T
Q  119 agcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgagggga-cttcttgagcattctaaaatatttcctttaacttgtataacc 216  Q
    |||||||   | ||||||||||| |||| |||| |||||||| |||||| |||| | | | ||||||||| |||||| |||| || |||||||||||||    
T  51649 agcgaagaaggtcttagtcagccactttttgaa-ttttgctttgtgcactagggaatccttttgagcattttaaaatgtttctttcaacttgtataacc 51552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 49 - 155
Target Start/End: Original strand, 23226 - 23332
Alignment:
Q  49 agcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaag-tgagccttagtcagcctctttc 147  Q
    |||||||||| |||||| |||||||  || | |||| ||||||| || ||||||| ||||||||||||||||||||| ||| |||||||||||| ||||     
T  23226 agcgaaccgtcagcgagttgaaccccaactttctgtgagccggttgcctaagcgagctagccgtcgcttaagcgaagatga-ccttagtcagccactttt 23324  T
Q  148 tgaacttt 155  Q
    ||||||||    
T  23325 tgaacttt 23332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 49 - 174
Target Start/End: Original strand, 15509 - 15633
Alignment:
Q  49 agcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaag-tgagccttagtcagcctctttc 147  Q
    |||||||||| ||||||| ||||||  || | |||| |||| |||||||||| || |||||| |||||||||||||| ||| |||||||||||| ||||     
T  15509 agcgaaccgtcagcgagcggaaccccaactttctgtgagccagtcgcttaagtgagctagccatcgcttaagcgaagatga-ccttagtcagccactttt 15607  T
Q  148 tgaacttttgcttcgtgcacgagggga 174  Q
    ||||  ||||| |||||||| ||||||    
T  15608 tgaa-atttgcctcgtgcactagggga 15633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 15475 - 15524
Alignment:
Q  4 aaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcga 53  Q
    |||||||||||| |||||| |||||||||||||||||||||||| |||||    
T  15475 aaaaaccattttcattctgccagaagttcgctcaagcgaaccgtcagcga 15524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 49 - 174
Target Start/End: Original strand, 41160 - 41283
Alignment:
Q  49 agcgaaccgtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaag-tgagccttagtcagcctctttc 147  Q
    ||||||| || ||||||| ||||||  |||| |||| ||||| ||||||||||||||||| |||||||||||||||| ||| |||||||||| | ||||     
T  41160 agcgaactgtcagcgagcggaaccccaaccttctgtgagccgatcgcttaagcgaactagacgtcgcttaagcgaagatga-ccttagtcagacacttt- 41257  T
Q  148 tgaacttttgcttcgtgcacgagggga 174  Q
    ||||| ||||| |||||||| ||||||    
T  41258 tgaac-tttgcctcgtgcactagggga 41283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 57 - 175
Target Start/End: Complemental strand, 72748 - 72631
Alignment:
Q  57 gtaagcgagctgaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttctgaactttt 156  Q
    ||||||||||  |||||  ||||  ||| ||| |||||||||||||| ||| || ||||||||||||  ||||||| |||||||| ||||||||| ||||    
T  72748 gtaagcgagcaaaaccccaaccttttgtgagctggtcgcttaagcgagctacccttcgcttaagcgagctgagcct-agtcagccactttctgaattttt 72650  T
Q  157 gcttcgtgcacgaggggac 175  Q
    ||||||||||  |||||||    
T  72649 gcttcgtgcattaggggac 72631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0720 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 90 - 175
Target Start/End: Original strand, 3882 - 3966
Alignment:
Q  90 ggtcgcttaagcgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggggac 175  Q
    |||||||||||||| ||| || ||||||||||||| ||||| ||||||||||| ||| |||||  ||||||||||||| |||||||    
T  3882 ggtcgcttaagcgagctacccttcgcttaagcgaactgagcattagtcagcctttttttgaac-cttgcttcgtgcactaggggac 3966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 90 - 167
Target Start/End: Complemental strand, 18121 - 18045
Alignment:
Q  90 ggtcgcttaagcgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcac 167  Q
    |||||||||||||| ||| |  ||||||||||||| ||||||||||||||||| |||||||||  |||||||||||||    
T  18121 ggtcgcttaagcgagctacctttcgcttaagcgaactgagccttagtcagcctttttctgaac-cttgcttcgtgcac 18045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 272 - 376
Target Start/End: Original strand, 9950 - 10053
Alignment:
Q  272 ttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgtt 371  Q
    |||||||||||  ||||||||||||||||||| |||||||| ||||| | | || |||||| |||||| ||  |  | ||||||||||||||||||| ||    
T  9950 ttagtgaatttg-gagatgattgagtatgaaaccaagtgaacatatactatgtttaatgaacttgatgcattagtttgattataattaattgtgtatttt 10048  T
Q  372 ctgga 376  Q
    |||||    
T  10049 ctgga 10053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2054 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold2054
Description:

Target: scaffold2054; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 228
Target Start/End: Complemental strand, 152 - 14
Alignment:
Q  90 ggtcgcttaagcgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgagggga-cttcttgagcattc 188  Q
    |||||||||||||| ||| || ||||||| ||||  ||||||||||  ||||||||||||||| ||||| |||||||| ||| || | | || || |||     
T  152 ggtcgcttaagcgagctacccttcgcttatgcgagctgagccttagctagcctctttctgaac-tttgcctcgtgcactaggagacccttttaagtattt 54  T
Q  189 taaaatatttcctttaacttgtataacccttgtataggta 228  Q
    | || | |||| |||| |||||||||| ||||||||||||    
T  53 ttaattgtttcttttagcttgtataactcttgtataggta 14  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 49641 - 49595
Alignment:
Q  1 gcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgt 47  Q
    ||||||||||||||||||||||||  |||||||||||| ||||||||    
T  49641 gcgaaaaaccattttgattctgtccaaagttcgctcaatcgaaccgt 49595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1427 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1427
Description:

Target: scaffold1427; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 339
Target Start/End: Complemental strand, 1273 - 1207
Alignment:
Q  272 ttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 339  Q
    |||||||||||  ||||||||||||||||||| |||||||| ||||| | | ||||||||| ||||||    
T  1273 ttagtgaatttg-gagatgattgagtatgaaaccaagtgaacatatactatgttgaatgaacttgatg 1207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 446
Target Start/End: Original strand, 46685 - 46748
Alignment:
Q  384 aattttcggagtagtaagtcatatgaa-atatatgtgtagttaagttgtatgtagatatacaca 446  Q
    ||||| |||||| |||||||||||||| |||||||  | || ||||||||||||||||||||||    
T  46685 aatttgcggagttgtaagtcatatgaacatatatgcattgtcaagttgtatgtagatatacaca 46748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 446
Target Start/End: Original strand, 50958 - 51021
Alignment:
Q  384 aattttcggagtagtaagtcatatgaa-atatatgtgtagttaagttgtatgtagatatacaca 446  Q
    ||||| |||||| |||||||||||||| |||||||  | || ||||||||||||||||||||||    
T  50958 aatttgcggagttgtaagtcatatgaacatatatgcattgtcaagttgtatgtagatatacaca 51021  T

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Target: scaffold0169 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 6343 - 6299
Alignment:
Q  180 tgagcattctaaaatatttcctttaacttgtataacccttgtata 224  Q
    ||||||||||||||| |||| || ||||||||||||| |||||||    
T  6343 tgagcattctaaaatgtttctttcaacttgtataacctttgtata 6299  T

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