View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1901_low_4 (Length: 449)
Name: NF1901_low_4
Description: NF1901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1901_low_4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 19 - 449
Target Start/End: Original strand, 39817244 - 39817672
Alignment:
| Q |
19 |
cagagatgcttagccttgttaaatgattttaatttaattgcatgagatgagattgtgatgcaattccaaacatgtttcaattagtaagattgtatgggat |
118 |
Q |
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| T |
39817244 |
cagagacgcttagccttgttaaatgattttaatttaattgcatgagatgagattgtgatgcaattccaaacatgtttcaattagtaagattgtatcggat |
39817343 |
T |
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| Q |
119 |
tgttctaagtttaactggattttcattttcagtttaggggtgcttttgttttgttttnnnnnnntatagacatttttggtaaatggtatcgaactgttaa |
218 |
Q |
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| T |
39817344 |
tgttctaagtttaactggattttcattttcagtttaggggtgcttttgttttgttttaaaaaa--atagacatttttggtaaatggtatcgaactgttaa |
39817441 |
T |
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| Q |
219 |
aatcataatattgtaatgctcaagggtttatgttctgttgaattttctatgcagggtgcatgtctctgtctgacaggaactgagattctttctcaatgcc |
318 |
Q |
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| T |
39817442 |
aatcataatattgtaatgctcaagggtttatgttctgttgaattttctatgcagggtgcatgtctctgtctgacaggaactgagattctttctcaatgcc |
39817541 |
T |
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| Q |
319 |
tcttttaaggagaaagcctttggctttggctgagcctcccgaggatttgaagccagatgagcatgtttaccaagttcgatttacaaaagaaatttttcga |
418 |
Q |
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| T |
39817542 |
tcttttaaggagaaagcctttggctttggctgagcctcccgaggatttgaagccagatgagcatgtttaccaagttcgatttacaaaagaaatttttcga |
39817641 |
T |
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| Q |
419 |
ggttatcagtatcctttatagtcatcaattt |
449 |
Q |
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| T |
39817642 |
gattatcagtatcctttatagtcatctattt |
39817672 |
T |
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