View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1901_low_6 (Length: 410)
Name: NF1901_low_6
Description: NF1901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1901_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 9 - 398
Target Start/End: Original strand, 29561579 - 29561967
Alignment:
| Q |
9 |
cacagagcatggaaagtttttcttcaatctcatttttcttactttctgatgaaagagccctttgtttccactcttgcacctgtgtgaaagaaaatacaaa |
108 |
Q |
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| T |
29561579 |
cacagagcatggaaagttttgcttcaatctcatttttcttactttctgatgaaagagccctttgtttccactcttgcacctgtgtgaaagaaaatacaaa |
29561678 |
T |
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| Q |
109 |
agttaatgcaaacaggaagcgccagaaataaacgactagaagtaaacacggtcctaagaggttgttgaatgtaagaataaactttatcttacatcattgt |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29561679 |
-gttaatgcaaacaggaagcgccagaaataaacgactagaagtaaacacggtcctaagaggttgttgaatgtaagaataaactttatcttacatcattgt |
29561777 |
T |
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| Q |
209 |
gtagagattggatttgagaatcagaatgcaaggcgcgatctttccagaaatctcgtgaagcctgcagttcttccatctcttccctcacctggcctagcat |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29561778 |
gtagagattggatttgagaatcagaatgcaaggcgcgatctttccagaaatctcgtgaagcctgcagttcttccatctcttccctcacctggcctagcat |
29561877 |
T |
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| Q |
309 |
ctcctgcatttgggaccattgttctgtctcaactctaacttgctccactattcttcttacaatagtcttgcaatgtcctgaacacaggtt |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29561878 |
ctcctgcatttgggaccattgttctgtctcaactctaacttgctccactattcttcttacaatagtcttgcaatgtcctgaacacaggtt |
29561967 |
T |
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