View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1901_low_7 (Length: 404)
Name: NF1901_low_7
Description: NF1901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1901_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 12 - 389
Target Start/End: Complemental strand, 698618 - 698240
Alignment:
| Q |
12 |
tcatcagcattaaaattgaccctgtcacacactggaaaagatatatacacaacatcagttaacccatggcagtaaccaaagcctattagttcataaaaag |
111 |
Q |
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| T |
698618 |
tcatcagcattaaaaatgaccctgtcacacactggaaaagatatatacacaacatcagttaacccatggcagtaaccaaagcctattagttcataaaaag |
698519 |
T |
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| Q |
112 |
gaaagaaaaccaaagcctataatatt-cctctgaagtcagtcattaatcgccggccaccaaaaactccacaagaaagcacactatccaaagctctaagct |
210 |
Q |
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| T |
698518 |
gaaagaaaaccaaagcctataatatttcctctgaagtcagtcattgattgccggccaccaaaaactccacaagaaagcacactatccaaagctctaagct |
698419 |
T |
|
| Q |
211 |
caatgatcaaaagcataggaaaacaaaaaacagatcagtcagataagtttaccaaggttccaatctctggtttaggttccaataactcggccataggctc |
310 |
Q |
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| T |
698418 |
caatgatcaaaagcataggaaaacaaaaaacagatcagtcagctaagtttaccaaggtcccaatctctggtttaggttccaataactcggccataggctc |
698319 |
T |
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| Q |
311 |
aattttatccataagttttttatatttcttctcttttctctcaaatttatgtagacacttctgatgataatttgttgct |
389 |
Q |
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| T |
698318 |
aattttatccataagttttttatatttcttctcttttctctcaaatttatgtagacacttctgatgataatttgttgct |
698240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 238
Target Start/End: Complemental strand, 665644 - 665591
Alignment:
| Q |
184 |
aaagcacactatccaaagctctaagctcaatgatcaaaagcataggaaaacaaaa |
238 |
Q |
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| T |
665644 |
aaagcacactatccaaagctctaagctcaatgaacaaaagcata-gaaaacaaaa |
665591 |
T |
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