View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1901_low_8 (Length: 398)
Name: NF1901_low_8
Description: NF1901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1901_low_8 |
 | |
|
| [»] scaffold0070 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 148 - 391
Target Start/End: Complemental strand, 7247471 - 7247228
Alignment:
| Q |
148 |
atatatgataaaataggcagtataggtagccaagcagcttacacttgacataatctgatggcactgttttcaaagaatgatgtggagacagcaaaaccaa |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7247471 |
atatatgataaaataggcagtataggtagctaagcagcttacacttgacataatctgatggcactgttttcaaagaatgatgtggagacagcaaaaccaa |
7247372 |
T |
|
| Q |
248 |
aggtgcatggactaacatgcatttgaatttaattttttctttgtacattagtttatgaatttctgtaaaagatgtcagagacaagggcagcagcagcaac |
347 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7247371 |
aggtgcatggactaacatgcatttgcatttaattttttctttgtacattagtttatgaatttgtgtaaaagatgtcagagacaagggcagcagcagcaac |
7247272 |
T |
|
| Q |
348 |
aacaaaggcaggtgcagagnnnnnnncagaagcatcacaggttc |
391 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
7247271 |
aacaaaggcaggtgcagagaaaaaaacagaagcatcacaggttc |
7247228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 7247625 - 7247524
Alignment:
| Q |
1 |
aaccaattcataagtcgataataagacgtccttattgtttatctgaggttgaactgtctctcaaatgttgaacttcaggaatcaaattcatattcttaat |
100 |
Q |
| |
|
||||||||||||||| ||||||| || ||||||||||||||| ||||||| | |||||||||||| || |||||||||||||||||| ||||||||||| |
|
|
| T |
7247625 |
aaccaattcataagttgataataggatgtccttattgtttatgcgaggttggaatgtctctcaaatattaaacttcaggaatcaaatttatattcttaat |
7247526 |
T |
|
| Q |
101 |
ct |
102 |
Q |
| |
|
|| |
|
|
| T |
7247525 |
ct |
7247524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 244 - 339
Target Start/End: Original strand, 25321379 - 25321474
Alignment:
| Q |
244 |
ccaaaggtgcatggactaacatgcatttgaatttaattttttctttgtacattagtttatgaatttctgtaaaagatgtcagagacaagggcagca |
339 |
Q |
| |
|
||||||||| |||||| |||||||||||||| || | ||||| |||||||||| || ||||||| |||||||||||| |||||||| ||||||| |
|
|
| T |
25321379 |
ccaaaggtgaatggaccaacatgcatttgaaatttagtttttatttgtacatttattagtgaatttttgtaaaagatgttagagacaaaggcagca |
25321474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 244 - 339
Target Start/End: Complemental strand, 18505 - 18409
Alignment:
| Q |
244 |
ccaaaggtgcatggactaacatgcatttgaatttaattttttctttgtacattagtttatgaatttctgt-aaaagatgtcagagacaagggcagca |
339 |
Q |
| |
|
||||||||| |||||| |||||||||||||| || | |||||||||||||||| || ||||||| ||| |||||||||||| ||||| ||||||| |
|
|
| T |
18505 |
ccaaaggtgaatggaccaacatgcatttgaaatttagtttttctttgtacatttccttgtgaatttttgtaaaaagatgtcagtgacaaaggcagca |
18409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University