View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19020_high_3 (Length: 462)
Name: NF19020_high_3
Description: NF19020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19020_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 226 - 396
Target Start/End: Complemental strand, 14755603 - 14755433
Alignment:
| Q |
226 |
gtcttatggttttttatatacgttgaaaatgaaaaactagttcatatatttgatgtggtttggtattttgtttaggagggaatcaataaagagtttgagg |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14755603 |
gtcttatggttttttatatacgttgaaaatgaaaaactagttcatatatttgatgtggtttggtattttgtttaggagggaatcaataaagagtttgagg |
14755504 |
T |
|
| Q |
326 |
aaaagaaaactgaacttcaaacaaaagtacttgcggtatatgaagcatcttcaactgaaatcaaggtaaga |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14755503 |
aaaagaaaactgaacttcaaacaaaagtacttgcggtatatgaagcatcttcaactgaaatcaaggtaaga |
14755433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 10 - 189
Target Start/End: Complemental strand, 14755804 - 14755623
Alignment:
| Q |
10 |
aggagcacagagaaaaacacagaagaagaaaaa--catttggaagcaaaagatgggttactggacaacaaaggttcttcccaagatcaagaaggtttttg |
107 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14755804 |
aggaccacagagaaaaacacagaagaaaaaaaaaacatttggaagcaaaagatgggttactggacaacaaaggttcttcccaagatcaagaaggtttttg |
14755705 |
T |
|
| Q |
108 |
agaagaatagtactaagaaaacagctgctgctgaggtttccaagacctttgatgagtcaaaggtttgttttcttaaatttta |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14755704 |
agaagaatagtactaagaaaacagctgctgctgaggtttccaagacctttgatgagtcaaaggtttgttttcttaaatttta |
14755623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University