View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19020_high_4 (Length: 342)
Name: NF19020_high_4
Description: NF19020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19020_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 223075 - 223402
Alignment:
| Q |
1 |
agctcaactggtttgagctaagagttaagtagtcggaagtctaggattcaagtcctcacaaggaaataaaaaac---acacaacaattaacatactaaca |
97 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
223075 |
agctcaactggtttgagctaagagttaagtagtcggaagcctaggattcaagtcctcacaaggaaataaaaaaactaacacaacaattaacatactaaca |
223174 |
T |
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| Q |
98 |
tttatcattnnnnnnntgtcaaaatcaatttcacatctctcttgaataaattttgccacatccaaaactgaaccaaacataaactaaactaaactcacaa |
197 |
Q |
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| T |
223175 |
tttatcattaaaaaaatgtcaaaatcaatttcacatctcta--gaataaattttgccacatccaaaactaaaccaaacataaactaaactaaactcacaa |
223272 |
T |
|
| Q |
198 |
taaaagtttcaaaatcaatttttacaaccttagtatgaaagaaacacttaacagaacaagtgatcgacatgcaaacagacacaaaagaacaaaaacaatg |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
223273 |
taaaagtttcaaaatcaatttttacaaccttagtatgaaagaaacacttaacagaacaagtgatcgacatgcaaacagacacaaaagaacaaaaacaatg |
223372 |
T |
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| Q |
298 |
acaaagagactttgtagcacatgaacattt |
327 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
223373 |
acaaagagactttgtagcacatgaacattt |
223402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 114 - 268
Target Start/End: Original strand, 218020 - 218170
Alignment:
| Q |
114 |
tgtcaaaatcaatttcacatctctcttgaataaattttgccacatccaaaactgaa-ccaaacataaactaaactaaactcacaataaaagtttcaaaat |
212 |
Q |
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||||||||||||||||||||||| ||| ||||||||| |||||||| |||| ||||||||| |||||||||| | || ||||| || ||||| |
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| T |
218020 |
tgtcaaaatcaatttcacatctccaa--aatcaattttgccttatccaaaagtgaaaccaaacatacactaaactaactt---aagaaaagattaaaaat |
218114 |
T |
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| Q |
213 |
caatttttacaaccttagtatgaaagaaacacttaacagaacaagtgatcgacatg |
268 |
Q |
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|||||||||||||||||| |||||||||||| | |||||||||||||||| ||||| |
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| T |
218115 |
caatttttacaaccttagaatgaaagaaacaataaacagaacaagtgatcaacatg |
218170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 270
Target Start/End: Original strand, 29839068 - 29839150
Alignment:
| Q |
189 |
aactcacaataaaagtttcaaaatcaatttttacaaccttagtatgaaagaaacacttaac-agaacaagtgatcgacatgca |
270 |
Q |
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|||||| |||||||| ||||||| |||||||||||||||| | || ||||||||||| ||| | ||| ||||||| ||||||| |
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| T |
29839068 |
aactcaaaataaaagattcaaaaacaatttttacaacctttggataaaagaaacactaaacaaaaacgagtgatcaacatgca |
29839150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 29728851 - 29728744
Alignment:
| Q |
1 |
agctcaactggtttgagctaagagttaagtagtcggaagtctaggattcaagtcctcacaaggaaataaaaaac--acacaacaattaacatactaacat |
98 |
Q |
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|||||||||||||||||||||| |||||| ||| ||| | ||| |||||||||| ||||| | ||||||| ||| ||||||||||||||||||| |
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| T |
29728851 |
agctcaactggtttgagctaagggttaaggagttggagattcagggttcaagtcctattaaggagaaaaaaaactaacataacaattaacatactaacac |
29728752 |
T |
|
| Q |
99 |
ttatcatt |
106 |
Q |
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|| ||||| |
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|
| T |
29728751 |
ttgtcatt |
29728744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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