View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19020_high_9 (Length: 203)
Name: NF19020_high_9
Description: NF19020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19020_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 20 - 187
Target Start/End: Complemental strand, 13258600 - 13258433
Alignment:
| Q |
20 |
atgtgtgtctgtggcgaaacaagtgttcctgtagaaattgttcaggttggagtttaccgatgttgggtattgccgcattctcctggattcgtgaatctct |
119 |
Q |
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| T |
13258600 |
atgtgtgtctgtggcgaaacaagtgttcctgtagaaattgttcaggttggagtttaccgatgttgggtattgccgcattctcctggattcgtgaatctct |
13258501 |
T |
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| Q |
120 |
atttgagcttcgatggccataagcctattagccaagttgttaattttgaatatcgcactcctattttg |
187 |
Q |
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| T |
13258500 |
atttgagcttcgatggccataagcctattagccaagttgttaattttgaatatcgcactcctattttg |
13258433 |
T |
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Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 39 - 187
Target Start/End: Original strand, 50270147 - 50270295
Alignment:
| Q |
39 |
caagtgttcctgtagaaattgttcaggttggagtttaccgatgttgggtattgccgcattctcctggattcgtgaatctctatttgagcttcgatggcca |
138 |
Q |
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| T |
50270147 |
caagtgttcctgcagaaattgttcaggatggggtataccgttgctgggtgccaccgcattctccaggatttgtgaatctctacttgagctttgatggcca |
50270246 |
T |
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| Q |
139 |
taagcctattagccaagttgttaattttgaatatcgcactcctattttg |
187 |
Q |
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| T |
50270247 |
taaccctatcagccaagttgttacttttgagtatcgtactcctgttttg |
50270295 |
T |
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