View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19020_low_1 (Length: 544)
Name: NF19020_low_1
Description: NF19020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19020_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 8 - 418
Target Start/End: Original strand, 47628052 - 47628449
Alignment:
| Q |
8 |
tgtcgaagaatatccagatgataggcctacaatgggaactgttgtttcatatcttaataatgtctcaattgaaatgccatttcccatggaaccagcattt |
107 |
Q |
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| T |
47628052 |
tgtccaagaaaatccagatgataggcctacaatgggaactgttgtttcatatcttaataatgtctcaattgaaatgccatttcccatggaaccagcattt |
47628151 |
T |
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| Q |
108 |
ttcatgcacggcaggacgagaagaaattcaggccattcagctggacatgaatcatattcaggtcattccaccaactattccctctcctcctccagtgtat |
207 |
Q |
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| T |
47628152 |
ttcatgcacggcaggacgagaagaaattcaggccattcagctggacatgaatcatattcaggtcattccaccaactattccctctcctcctccagtgtat |
47628251 |
T |
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| Q |
208 |
gtcctcgatagtcgtctttcatactatattagtacttctgtttacaacactcacgcattttgtgcaccaaccatgcttgtgttataccccggtggccggt |
307 |
Q |
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| T |
47628252 |
gtcctcgatagtcgtctttcatactatattagtacttctgtttacaacactcacgcattttgtgcaccaaccatgcttgtgttataccccggtggccggt |
47628351 |
T |
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| Q |
308 |
ggtgtctcattcacatatgtgtctataatctatatctgtatatacaagtcaaaaaatgtttgtaattttatatgtaaatcatgttttgttattaataaaa |
407 |
Q |
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| T |
47628352 |
ggtgtctcattcacatatgtgtcta-------------tatatacaaatcaaaaaatgtttgtaattttatatgtaaatcatgttttgttattaataaaa |
47628438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 404 - 523
Target Start/End: Original strand, 47628468 - 47628587
Alignment:
| Q |
404 |
aaaatatgaacattatttaattgcaattttgatttcctaaatttagattatatgggactttgattcctaagttttctttttcaagtcaaccagatattct |
503 |
Q |
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| T |
47628468 |
aaaatatgaacattatttaatttcaattttgatttcctaaatttagattatatgggactttgattcctaagttttctttttcaagtcaactagatatgct |
47628567 |
T |
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| Q |
504 |
tattttcataatgaaactaa |
523 |
Q |
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|||||| ||||||||||||| |
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| T |
47628568 |
tatttttataatgaaactaa |
47628587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 47619875 - 47619958
Alignment:
| Q |
8 |
tgtcgaagaatatccagatgataggcctacaatgggaactgttgtttcatatcttaataatgtctcaattgaaatgccatttcc |
91 |
Q |
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|||| ||||| ||||| ||| ||| |||||||||| ||| || ||||||||||||| |||| |||| ||||| |||||||||| |
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| T |
47619875 |
tgtccaagaaaatccaaatgctagacctacaatggcaacagtcgtttcatatcttactaatcactcacttgaactgccatttcc |
47619958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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