View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19020_low_4 (Length: 348)
Name: NF19020_low_4
Description: NF19020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19020_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 9 - 329
Target Start/End: Original strand, 15843543 - 15843863
Alignment:
| Q |
9 |
agcagagaaaatagtgcaagactgatgcacagttgctactaatcaagtattgttcaatcaatatttagttttcagtttgctttttaattggaccatattg |
108 |
Q |
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| T |
15843543 |
agcagagaaaatagtgcaagactgatgcacagttgctactaatcaagtattgttcaatcaatatttagttttcagtttgctttttaattggaccatattg |
15843642 |
T |
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| Q |
109 |
ttctcttataataggtaatgacttgaaacttcctacactagaagggatagttaatgcttgaatcatgttattatattttcattatgggagaacttttaaa |
208 |
Q |
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| T |
15843643 |
ttctcttataataggtaatgacttgaaacttcctacactagaagggatagttaatgcttgaatcatgttattatattttcattatgggagaacttttaaa |
15843742 |
T |
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| Q |
209 |
atatacagatgaaatcagcaacactcgggcaaaatatggacatcaggcaggagtagaaaatttgtcagatattatgctcggaccctttttctataatcca |
308 |
Q |
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| T |
15843743 |
atatacagatgaaatcagcaacactcgggcaaaatatggacatcaagcaggagtagaaaatttgtcagatattatgctcggactctttttctataatcca |
15843842 |
T |
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| Q |
309 |
acgatgcgaaaagagcaccac |
329 |
Q |
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| T |
15843843 |
acgatgcgaaaagagcaccac |
15843863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 147 - 212
Target Start/End: Original strand, 31997273 - 31997338
Alignment:
| Q |
147 |
tagaagggatagttaatgcttgaatcatgttattatattttcattatgggagaacttttaaaatat |
212 |
Q |
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| T |
31997273 |
tagaagagagagttaatacttgaatcatgttattatgttttcgttatgggagaactttaaaaatat |
31997338 |
T |
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