View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19020_low_6 (Length: 340)
Name: NF19020_low_6
Description: NF19020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19020_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 21 - 317
Target Start/End: Complemental strand, 19119253 - 19118958
Alignment:
| Q |
21 |
tgaaaagaatggattagatttcggggaagttaatgaagaaactgcacagccttcaaatggtgttggttttgttgtcgagtgagatgaagagacttagtat |
120 |
Q |
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| T |
19119253 |
tgaaaagaatggattagatttcggggaagttaatgaagaaactgcacagccttcaaatggtgttggttttgttgtcg-gtgaaaggaagagacttagtat |
19119155 |
T |
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| Q |
121 |
ctaccaagaaatcctgcaaagttatgatgaattgaagattgatagcattagtttgaaacaggcgaaagaaaaaatcttgaggtattgatttgagcacaga |
220 |
Q |
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| T |
19119154 |
ctaccaagaaatcctgcaaagttatgatgaattgaagattgatagcattagtttgaaacaggcgaaagaaaaaatcttgaggtattgatttgagcacaga |
19119055 |
T |
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| Q |
221 |
cttcatttatttttatttacttaaacatatatgttttaataataaacaaaagcatcttagnnnnnnnagttgttttgaaattcagtattcaaacact |
317 |
Q |
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| T |
19119054 |
cttcatttatttttatttacttaaacatatatgttttaataataaacaaaagcatcttagtttttttagttgttttgaaattcagtattcaaacact |
19118958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 106 - 261
Target Start/End: Complemental strand, 19112072 - 19111917
Alignment:
| Q |
106 |
gaagagacttagtatctaccaagaaatcctgcaaagttatgatgaattgaagattgatagcattagtttgaaacaggcgaaagaaaaaatcttgaggtat |
205 |
Q |
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|||| ||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||| | ||||||| | || ||||||||||||||||||||| |
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| T |
19112072 |
gaagcgacttggtatttaccaagaaatcctgcaaagttatgatgcattgaagattgatagcaagaatttgaaagaagccaaagaaaaaatcttgaggtat |
19111973 |
T |
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| Q |
206 |
tgatttgagcacagacttcatttatttttatttacttaaacatatatgttttaata |
261 |
Q |
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| T |
19111972 |
tgatttgaactcaaatttcatttgtttttatttacttaactatatatgtcttaata |
19111917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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