View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19020_low_9 (Length: 204)

Name: NF19020_low_9
Description: NF19020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19020_low_9
NF19020_low_9
[»] chr6 (2 HSPs)
chr6 (15-187)||(11390691-11390863)
chr6 (15-187)||(11419761-11419933)
[»] chr3 (16 HSPs)
chr3 (86-187)||(24108911-24109012)
chr3 (90-187)||(24614659-24614756)
chr3 (85-187)||(23693213-23693315)
chr3 (85-187)||(23711653-23711755)
chr3 (85-187)||(23730109-23730211)
chr3 (85-187)||(23748564-23748666)
chr3 (86-187)||(24116618-24116719)
chr3 (86-187)||(23689756-23689857)
chr3 (86-187)||(24061993-24062094)
chr3 (15-78)||(23693128-23693191)
chr3 (15-78)||(23711568-23711631)
chr3 (15-78)||(23730024-23730087)
chr3 (15-78)||(23748479-23748542)
chr3 (15-78)||(23689670-23689733)
chr3 (15-78)||(24061907-24061970)
chr3 (23-78)||(24116742-24116797)


Alignment Details
Target: chr6 (Bit Score: 169; Significance: 8e-91; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 15 - 187
Target Start/End: Original strand, 11390691 - 11390863
Alignment:
Q  15 ttatactgcaaaaacttgattggaatttaacagttacaacaccttatgtgttccttgttagaaatattaaggatgaagacaagatgatggaaaatatggt 114  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11390691 ttatactgcaaaaactggattggaatttaacagttacaacaccttatgtgttccttgttagaaatattaaggatgaagacaagatgatggaaaatatggt 11390790  T
Q  115 gtttttcttttcagagctgagcttgacacattattcaattgtgtgtgactataaaccttctatgattgctgct 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11390791 gtttttcttttcagagctgagcttgacacattattcaattgtgtgtgactataaaccttctatgattgctgct 11390863  T

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Target: chr6; HSP #2
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 15 - 187
Target Start/End: Complemental strand, 11419933 - 11419761
Alignment:
Q  15 ttatactgcaaaaacttgattggaatttaacagttacaacaccttatgtgttccttgttagaaatattaaggatgaagacaagatgatggaaaatatggt 114  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11419933 ttatactgcaaaaactggattggaatttaacagttacaacaccttatgtgttccttgttagaaatattaaggatgaagacaagatgatggaaaatatggt 11419834  T
Q  115 gtttttcttttcagagctgagcttgacacattattcaattgtgtgtgactataaaccttctatgattgctgct 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11419833 gtttttcttttcagagctgagcttgacacattattcaattgtgtgtgactataaaccttctatgattgctgct 11419761  T

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Target: chr3 (Bit Score: 50; Significance: 8e-20; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 86 - 187
Target Start/End: Complemental strand, 24109012 - 24108911
Alignment:
Q  86 gatgaagacaagatgatggaaaatatggtgtttttcttttcagagctgagcttgacacattattcaattgtgtgtgactataaaccttctatgattgctg 185  Q
    |||||||| ||||| ||||| || ||||||||||||||||| || || ||||||||| || |||| |||||||| |||||||| ||||| ||||||||||    
T  24109012 gatgaagataagatcatggagaagatggtgtttttcttttctgaactcagcttgacaaatcattctattgtgtgcgactataagccttcaatgattgctg 24108913  T
Q  186 ct 187  Q
    ||    
T  24108912 ct 24108911  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 90 - 187
Target Start/End: Original strand, 24614659 - 24614756
Alignment:
Q  90 aagacaagatgatggaaaatatggtgtttttcttttcagagctgagcttgacacattattcaattgtgtgtgactataaaccttctatgattgctgct 187  Q
    |||||||||| ||||| || |||||||||||||| || ||||||||||||||| || | || |||||||| |||||||| ||||| ||||||||||||    
T  24614659 aagacaagatcatggagaacatggtgtttttcttctctgagctgagcttgacaaatcaatccattgtgtgcgactataagccttcaatgattgctgct 24614756  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 85 - 187
Target Start/End: Original strand, 23693213 - 23693315
Alignment:
Q  85 ggatgaagacaagatgatggaaaatatggtgtttttcttttcagagctgagcttgacacattattcaattgtgtgtgactataaaccttctatgattgct 184  Q
    ||||||||||||||| |||||  | ||||||||||||||||| || || ||||| ||| || |||| |||||||| ||||| || |||||||||||||||    
T  23693213 ggatgaagacaagatcatggagcacatggtgtttttcttttctgaactcagcttaacaaatcattctattgtgtgcgactacaagccttctatgattgct 23693312  T
Q  185 gct 187  Q
    |||    
T  23693313 gct 23693315  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 85 - 187
Target Start/End: Original strand, 23711653 - 23711755
Alignment:
Q  85 ggatgaagacaagatgatggaaaatatggtgtttttcttttcagagctgagcttgacacattattcaattgtgtgtgactataaaccttctatgattgct 184  Q
    ||||||||||||||| |||||  | ||||||||||||||||| || || ||||| ||| || |||| |||||||| ||||| || |||||||||||||||    
T  23711653 ggatgaagacaagatcatggagcacatggtgtttttcttttctgaactcagcttaacaaatcattctattgtgtgcgactacaagccttctatgattgct 23711752  T
Q  185 gct 187  Q
    |||    
T  23711753 gct 23711755  T

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Target: chr3; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 85 - 187
Target Start/End: Original strand, 23730109 - 23730211
Alignment:
Q  85 ggatgaagacaagatgatggaaaatatggtgtttttcttttcagagctgagcttgacacattattcaattgtgtgtgactataaaccttctatgattgct 184  Q
    ||||||||||||||| |||||  | ||||||||||||||||| || || ||||| ||| || |||| |||||||| ||||| || |||||||||||||||    
T  23730109 ggatgaagacaagatcatggagcacatggtgtttttcttttctgaactcagcttaacaaatcattctattgtgtgcgactacaagccttctatgattgct 23730208  T
Q  185 gct 187  Q
    |||    
T  23730209 gct 23730211  T

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Target: chr3; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 85 - 187
Target Start/End: Original strand, 23748564 - 23748666
Alignment:
Q  85 ggatgaagacaagatgatggaaaatatggtgtttttcttttcagagctgagcttgacacattattcaattgtgtgtgactataaaccttctatgattgct 184  Q
    ||||||||||||||| |||||  | ||||||||||||||||| || || ||||| ||| || |||| |||||||| ||||| || |||||||||||||||    
T  23748564 ggatgaagacaagatcatggagcacatggtgtttttcttttctgaactcagcttaacaaatcattctattgtgtgcgactacaagccttctatgattgct 23748663  T
Q  185 gct 187  Q
    |||    
T  23748664 gct 23748666  T

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Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 86 - 187
Target Start/End: Complemental strand, 24116719 - 24116618
Alignment:
Q  86 gatgaagacaagatgatggaaaatatggtgtttttcttttcagagctgagcttgacacattattcaattgtgtgtgactataaaccttctatgattgctg 185  Q
    |||||||||||||| ||||| |||||||||||||||||||| ||  | ||||||||| || |||| |||||||| ||||| || |||||  |||||||||    
T  24116719 gatgaagacaagatcatggagaatatggtgtttttcttttcggaagtcagcttgacaaatcattctattgtgtgcgactacaagccttcattgattgctg 24116620  T
Q  186 ct 187  Q
    ||    
T  24116619 ct 24116618  T

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Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 86 - 187
Target Start/End: Original strand, 23689756 - 23689857
Alignment:
Q  86 gatgaagacaagatgatggaaaatatggtgtttttcttttcagagctgagcttgacacattattcaattgtgtgtgactataaaccttctatgattgctg 185  Q
    |||||||||||||| ||||| || ||||||||||||||||| || || ||||||||| || |||| ||||| || ||||| || |||||  |||||||||    
T  23689756 gatgaagacaagatcatggagaacatggtgtttttcttttcggaactcagcttgacaaatcattccattgtctgcgactacaagccttcattgattgctg 23689855  T
Q  186 ct 187  Q
    ||    
T  23689856 ct 23689857  T

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Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 86 - 187
Target Start/End: Original strand, 24061993 - 24062094
Alignment:
Q  86 gatgaagacaagatgatggaaaatatggtgtttttcttttcagagctgagcttgacacattattcaattgtgtgtgactataaaccttctatgattgctg 185  Q
    |||||||||||||| ||||| || ||||||||||||||||| || || ||||||||| || |||| ||||| || ||||| || |||||  |||||||||    
T  24061993 gatgaagacaagatcatggagaacatggtgtttttcttttcggaactcagcttgacaaatcattccattgtctgcgactacaagccttcattgattgctg 24062092  T
Q  186 ct 187  Q
    ||    
T  24062093 ct 24062094  T

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Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 23693128 - 23693191
Alignment:
Q  15 ttatactgcaaaaacttgattggaatttaacagttacaacaccttatgtgttccttgttagaaa 78  Q
    |||| |||||| |||||| ||||| |||||||||| ||||||||||||| || |||||||||||    
T  23693128 ttatcctgcaagaacttggttggattttaacagttccaacaccttatgtttttcttgttagaaa 23693191  T

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Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 23711568 - 23711631
Alignment:
Q  15 ttatactgcaaaaacttgattggaatttaacagttacaacaccttatgtgttccttgttagaaa 78  Q
    |||| |||||| |||||| ||||| |||||||||| ||||||||||||| || |||||||||||    
T  23711568 ttatcctgcaagaacttggttggattttaacagttccaacaccttatgtttttcttgttagaaa 23711631  T

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Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 23730024 - 23730087
Alignment:
Q  15 ttatactgcaaaaacttgattggaatttaacagttacaacaccttatgtgttccttgttagaaa 78  Q
    |||| |||||| |||||| ||||| |||||||||| ||||||||||||| || |||||||||||    
T  23730024 ttatcctgcaagaacttggttggattttaacagttccaacaccttatgtttttcttgttagaaa 23730087  T

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Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 23748479 - 23748542
Alignment:
Q  15 ttatactgcaaaaacttgattggaatttaacagttacaacaccttatgtgttccttgttagaaa 78  Q
    |||| |||||| |||||| ||||| |||||||||| ||||||||||||| || |||||||||||    
T  23748479 ttatcctgcaagaacttggttggattttaacagttccaacaccttatgtttttcttgttagaaa 23748542  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 23689670 - 23689733
Alignment:
Q  15 ttatactgcaaaaacttgattggaatttaacagttacaacaccttatgtgttccttgttagaaa 78  Q
    |||| |||||| |||||| ||||| |||||| ||| ||||||||||||| || |||||||||||    
T  23689670 ttatcctgcaagaacttggttggattttaacggttccaacaccttatgtttttcttgttagaaa 23689733  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 24061907 - 24061970
Alignment:
Q  15 ttatactgcaaaaacttgattggaatttaacagttacaacaccttatgtgttccttgttagaaa 78  Q
    |||| |||||| |||||| ||||| |||||| ||| ||||||||||||| || |||||||||||    
T  24061907 ttatcctgcaagaacttggttggattttaacggttccaacaccttatgtttttcttgttagaaa 24061970  T

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Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 24116797 - 24116742
Alignment:
Q  23 caaaaacttgattggaatttaacagttacaacaccttatgtgttccttgttagaaa 78  Q
    |||||||||| ||||| |||||| ||| ||||||||||||| || |||||||||||    
T  24116797 caaaaacttggttggattttaacggttccaacaccttatgtttttcttgttagaaa 24116742  T

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