View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19021_low_1 (Length: 607)

Name: NF19021_low_1
Description: NF19021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19021_low_1
NF19021_low_1
[»] chr7 (3 HSPs)
chr7 (122-597)||(43911302-43911777)
chr7 (16-55)||(43911194-43911233)
chr7 (256-302)||(42129775-42129821)
[»] chr1 (5 HSPs)
chr1 (378-477)||(39975780-39975879)
chr1 (127-213)||(35058507-35058591)
chr1 (169-213)||(1415640-1415684)
chr1 (176-215)||(23909040-23909079)
chr1 (141-182)||(2774202-2774241)
[»] chr5 (3 HSPs)
chr5 (123-213)||(13263524-13263610)
chr5 (131-205)||(15120950-15121022)
chr5 (142-213)||(34561832-34561900)
[»] chr8 (4 HSPs)
chr8 (127-196)||(41470019-41470086)
chr8 (133-188)||(25418510-25418569)
chr8 (138-181)||(14354613-14354654)
chr8 (160-188)||(25499075-25499103)
[»] chr3 (2 HSPs)
chr3 (128-213)||(3729638-3729721)
chr3 (127-191)||(44560122-44560184)
[»] chr6 (1 HSPs)
chr6 (167-215)||(2255143-2255191)
[»] chr4 (1 HSPs)
chr4 (15-55)||(52327345-52327385)


Alignment Details
Target: chr7 (Bit Score: 460; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 122 - 597
Target Start/End: Original strand, 43911302 - 43911777
Alignment:
Q  122 tgcttgtgagaaaataactgttaccaaatgagtcttttttagtcatatatgagcttataagttataagctcaaaattgtgtcttgccaaacaaaactgtg 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  43911302 tgcttgtgagaaaataactgttaccaaatgagtcttttttagtcatatatgagcttataagttataagctcaaaattgtgtctggccaaacaaaactgtg 43911401  T
Q  222 tcaggttatataataatataccgtgactattgacgacaagatgattgtattaaggcttatggttttattctgatcttttaagataagggctttacattgt 321  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  43911402 tcaggttatataataatataccgtgactattgacaacaagatgattgtattaaggcttatagttttattctgatcttttaagataagggctttacattgt 43911501  T
Q  322 atctgtgatgttaacgtcttttcatcttttaaggcaaatgtgaggcaatactacctgcaatttgaagagcaacaaacccaaagtttaattgatcaaagga 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43911502 atctgtgatgttaacgtcttttcatcttttaaggcaaatgtgaggcaatactacctgcaatttgaagagcaacaaacccaaagtttaattgatcaaagga 43911601  T
Q  422 ttaaggaacatctcgggcaagctgcagcatttcagcaagttggtgtagcttttaatcccatgatggctcaaaggccttctatgcccatcttgccaccacc 521  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43911602 ttaaggaacatctcgggcaagctgcagcatttcagcaagttggtgtagcttttaatcccatgatggctcaaaggccttctatgcccatcttgccaccacc 43911701  T
Q  522 aaggttgccaattcctggaagtgttccaggctttggtggacaacaactattcccagggatgagacctatgatgatg 597  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  43911702 aaggttgccaattcctggaagtgttccaggctttggtggacaacaacttttcccagggatgagacctatgatgatg 43911777  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 43911194 - 43911233
Alignment:
Q  16 agagaaaaaatgataagctttaagctgcctgaattagctt 55  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  43911194 agagaaaaaatgataagctttaagctgcctgaattagctt 43911233  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 42129775 - 42129821
Alignment:
Q  256 gacaagatgattgtattaaggcttatggttttattctgatcttttaa 302  Q
    |||||||||||||| ||||||||||| |||| |||||||||||||||    
T  42129775 gacaagatgattgtgttaaggcttatagtttcattctgatcttttaa 42129821  T

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Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 378 - 477
Target Start/End: Complemental strand, 39975879 - 39975780
Alignment:
Q  378 gcaatttgaagagcaacaaacccaaagtttaattgatcaaaggattaaggaacatctcgggcaagctgcagcatttcagcaagttggtgtagcttttaat 477  Q
    |||||||||||| || |||||||||||||||||||||||| |||| || |||||||| || |||||||| || ||||||   |||||||| |||| ||||    
T  39975879 gcaatttgaagaacagcaaacccaaagtttaattgatcaacggatcaaagaacatcttggacaagctgcggcttttcaggcggttggtgtggcttataat 39975780  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 127 - 213
Target Start/End: Complemental strand, 35058591 - 35058507
Alignment:
Q  127 gtgagaaaataactgttaccaaatgagtcttttttagtcatatatgagcttataagttataagctcaaaattgtgtcttgccaaaca 213  Q
    ||||| |||| |||||||||||| | ||| | ||||||||||   ||||||||||||||||||||||||  |||||||| |||||||    
T  35058591 gtgagcaaatgactgttaccaaacgggtcatctttagtcatac--gagcttataagttataagctcaaacatgtgtcttaccaaaca 35058507  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 1415684 - 1415640
Alignment:
Q  169 tatgagcttataagttataagctcaaaattgtgtcttgccaaaca 213  Q
    |||||||||||||| ||||||||||||| | ||||||||||||||    
T  1415684 tatgagcttataagctataagctcaaaaatatgtcttgccaaaca 1415640  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 215
Target Start/End: Original strand, 23909040 - 23909079
Alignment:
Q  176 ttataagttataagctcaaaattgtgtcttgccaaacaaa 215  Q
    ||||||| ||||||||||||||| ||||||||||||||||    
T  23909040 ttataaggtataagctcaaaattatgtcttgccaaacaaa 23909079  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 141 - 182
Target Start/End: Complemental strand, 2774241 - 2774202
Alignment:
Q  141 gttaccaaatgagtcttttttagtcatatatgagcttataag 182  Q
    |||||||||||||||||||||||||  |||||||||||||||    
T  2774241 gttaccaaatgagtcttttttagtc--atatgagcttataag 2774202  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 123 - 213
Target Start/End: Original strand, 13263524 - 13263610
Alignment:
Q  123 gcttgtgagaaaataactgttaccaaatgagtcttttttagtcatatatgagcttataagttataagctcaaaattgtgtcttgccaaaca 213  Q
    |||||||||||||| | ||||||||||  ||||| |||||||||||    || ||||||| |||||| |||||||||||||| ||||||||    
T  13263524 gcttgtgagaaaatgattgttaccaaacaagtctattttagtcata----agtttataagctataagatcaaaattgtgtctcgccaaaca 13263610  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 131 - 205
Target Start/End: Original strand, 15120950 - 15121022
Alignment:
Q  131 gaaaataactgttaccaaatgagtcttttttagtcatatatgagcttataagttataagctcaaaattgtgtctt 205  Q
    |||||||||||||||||||   |||| |||||| |||| |  |||||||||| ||||||||||||||||||||||    
T  15120950 gaaaataactgttaccaaacaggtctattttaggcataca--agcttataagctataagctcaaaattgtgtctt 15121022  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 213
Target Start/End: Complemental strand, 34561900 - 34561832
Alignment:
Q  142 ttaccaaatgagtcttttttagtcatatatgagcttataagttataagctcaaaattgtgtcttgccaaaca 213  Q
    ||||| || |||||||| |||||  |||||||||||||||| ||||||||| ||||||||||||| ||||||    
T  34561900 ttaccgaacgagtctttcttagt--tatatgagcttataagctataagctc-aaattgtgtcttggcaaaca 34561832  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 127 - 196
Target Start/End: Complemental strand, 41470086 - 41470019
Alignment:
Q  127 gtgagaaaataactgttaccaaatgagtcttttttagtcatatatgagcttataagttataagctcaaaa 196  Q
    |||||||||| || ||||||||| | ||||||||||||  |||||||||||||||| ||||||| |||||    
T  41470086 gtgagaaaatgacagttaccaaacgggtcttttttagt--tatatgagcttataagctataagcccaaaa 41470019  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 133 - 188
Target Start/End: Complemental strand, 25418569 - 25418510
Alignment:
Q  133 aaataactgttaccaaatgagtctttttta----gtcatatatgagcttataagttataa 188  Q
    ||||||| |||||||||||  |||||||||    ||||||||||||||||||||||||||    
T  25418569 aaataacggttaccaaatggatcttttttaattagtcatatatgagcttataagttataa 25418510  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 138 - 181
Target Start/End: Original strand, 14354613 - 14354654
Alignment:
Q  138 actgttaccaaatgagtcttttttagtcatatatgagcttataa 181  Q
    |||||||||||||| |||||||||||||  ||||||||||||||    
T  14354613 actgttaccaaatgggtcttttttagtc--atatgagcttataa 14354654  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 160 - 188
Target Start/End: Complemental strand, 25499103 - 25499075
Alignment:
Q  160 ttagtcatatatgagcttataagttataa 188  Q
    |||||||||||||||||||||||||||||    
T  25499103 ttagtcatatatgagcttataagttataa 25499075  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 213
Target Start/End: Complemental strand, 3729721 - 3729638
Alignment:
Q  128 tgagaaaataactgttaccaaatgagtcttttttagtcatatatgagcttataagttataagctcaaaattgtgtcttgccaaaca 213  Q
    ||||||||| || |||||||||||  | |||||||||||||   ||||||||||| ||||||||||||  |||||||| |||||||    
T  3729721 tgagaaaatcacggttaccaaatggatattttttagtcataa--gagcttataaggtataagctcaaatatgtgtctttccaaaca 3729638  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 44560184 - 44560122
Alignment:
Q  127 gtgagaaaataactgttaccaaatgagtcttttttagtcatatatgagcttataagttataagct 191  Q
    |||||||||| || |||||||||   |||||||||||||  |||||| |||||||||||||||||    
T  44560184 gtgagaaaatgacggttaccaaacatgtcttttttagtc--atatgaacttataagttataagct 44560122  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 2255191 - 2255143
Alignment:
Q  167 tatatgagcttataagttataagctcaaaattgtgtcttgccaaacaaa 215  Q
    |||||||||||||||| |||||||||||||  ||||| |||||||||||    
T  2255191 tatatgagcttataagctataagctcaaaaaagtgtcatgccaaacaaa 2255143  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 52327385 - 52327345
Alignment:
Q  15 gagagaaaaaatgataagctttaagctgcctgaattagctt 55  Q
    |||||||||||| |||||||||||||| | |||||||||||    
T  52327385 gagagaaaaaattataagctttaagctacttgaattagctt 52327345  T

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