View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19021_low_2 (Length: 590)

Name: NF19021_low_2
Description: NF19021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19021_low_2
NF19021_low_2
[»] chr8 (4 HSPs)
chr8 (17-248)||(7934749-7934977)
chr8 (17-248)||(34578706-34578935)
chr8 (309-372)||(7935038-7935101)
chr8 (309-372)||(34578582-34578645)
[»] chr2 (5 HSPs)
chr2 (20-232)||(45623364-45623575)
chr2 (392-580)||(45622936-45623111)
chr2 (309-372)||(45623235-45623296)
chr2 (316-369)||(9809470-9809522)
chr2 (316-372)||(16248453-16248507)
[»] chr5 (2 HSPs)
chr5 (18-197)||(29846975-29847154)
chr5 (18-195)||(29867169-29867346)
[»] chr7 (1 HSPs)
chr7 (325-372)||(27128904-27128951)
[»] chr4 (1 HSPs)
chr4 (316-372)||(31888821-31888875)


Alignment Details
Target: chr8 (Bit Score: 172; Significance: 4e-92; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 17 - 248
Target Start/End: Original strand, 7934749 - 7934977
Alignment:
Q  17 cagctttaacagtggcagtctactagctttggtggtgtatgctaagatacaatttaaactcaaaggatcacaagttttgatgaggtctgcattattaaag 116  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  7934749 cagctttaacagtggtagtctactggctttggtggtgtatgctaagatacaatttaaactcaaaggatcacaagttctgatgagggctgcattattaaag 7934848  T
Q  117 agtaggcggataaaactgaaactcagaagnnnnnnnntgtgattgcttgttttacaaactcaaagtgagatattttataggacaaactcaaagtgagaga 216  Q
    ||||||||||||||||||||||||| ||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7934849 agtaggcggataaaactgaaactcaaaa---aaaaaatgtgattgcttgttttacaaactcaaagtgagatattttataggacaaactcaaagtgagaga 7934945  T
Q  217 ttatttgtggctatggttcctatggaaactgt 248  Q
    |||||||||| |||||||||||||||| ||||    
T  7934946 ttatttgtggatatggttcctatggaacctgt 7934977  T

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Target: chr8; HSP #2
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 34578935 - 34578706
Alignment:
Q  17 cagctttaacagtggcagtctactagctttggtggtgtatgctaagatacaatttaaactcaaaggatcacaagttttgatgaggtctgcattattaaag 116  Q
    ||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  34578935 cagctttaacagtggtaatctactagctttggtggtgtattctaagatacaatttaaactcaaaggatcacaagttttgatgagggctgcattattaaag 34578836  T
Q  117 agtaggcggataaaactgaaactcagaagnnnnnnnntgtgattgcttgttttacaaactcaaagtgagatattttataggacaaactcaaagtgagaga 216  Q
    ||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  34578835 agtaggcggataaaactgaaactcagaa--aaaaaaatgtgattgcttgttttacaaactcaaagtgagatattttatacgacaaactcaaagtgagaga 34578738  T
Q  217 ttatttgtggctatggttcctatggaaactgt 248  Q
    |||||||||||||| |||||||||||| ||||    
T  34578737 ttatttgtggctatagttcctatggaacctgt 34578706  T

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Target: chr8; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 309 - 372
Target Start/End: Original strand, 7935038 - 7935101
Alignment:
Q  309 aggatagacttttctttctcccctaattttctcttccctctttgtgtctcaacctttagatcaa 372  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7935038 aggatagacttttctctctcccctaattttctcttccctctttgtgtctcaacctttagatcaa 7935101  T

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Target: chr8; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 309 - 372
Target Start/End: Complemental strand, 34578645 - 34578582
Alignment:
Q  309 aggatagacttttctttctcccctaattttctcttccctctttgtgtctcaacctttagatcaa 372  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  34578645 aggatagacttttctctctcccttaattttctcttccctctttgtgtctcaacctttagatcaa 34578582  T

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Target: chr2 (Bit Score: 161; Significance: 1e-85; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 20 - 232
Target Start/End: Complemental strand, 45623575 - 45623364
Alignment:
Q  20 ctttaacagtggcagtctactagctttggtggtgtatgctaagatacaatttaaactcaaaggatcacaagttttgatgaggtctgcattattaaagagt 119  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  45623575 ctttaacagtggtagtctactagctttggtggtgtatgctatgatacaatttaaactcaaaggatcacaagttttgatgagggctgcattattaaagagt 45623476  T
Q  120 aggcggataaaactgaaactcagaagnnnnnnnntgtgattgcttgttttacaaactcaaagtgagatattttataggacaaactcaaagtgagagatta 219  Q
    |||||||||||||||||||||||||         |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  45623475 aggcggataaaactgaaactcagaa-aaaaaaaatgtggttgcttgttttacaaactcaaagtgagatattttataggacaaactcaaaatgagagatta 45623377  T
Q  220 tttgtggctatgg 232  Q
    |||||||||||||    
T  45623376 tttgtggctatgg 45623364  T

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Target: chr2; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 392 - 580
Target Start/End: Complemental strand, 45623111 - 45622936
Alignment:
Q  392 tgggtgatgctttatacggtagtatatactatagtaaaaaataatattgacaaagctaatatacaaagctaattaattattatatattttactaccaaca 491  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||    
T  45623111 tgggtgatgctttatacggtagtatatactatagtaaaaaataatattgacaaagctaat-------------taattattatatattttactaccaaca 45623025  T
Q  492 tgaaagagcaattatgacctggctgccaccgtcctttcgttgcttcacttcgacggccctttcaccagactctggtcgcatgatgatgt 580  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45623024 tgaaagagcaattatgacctggctgccaccgtcctttcgttgcttcacttcgacggccctttcaccagactctggtcgcatgatgatgt 45622936  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 309 - 372
Target Start/End: Complemental strand, 45623296 - 45623235
Alignment:
Q  309 aggatagacttttctttctcccctaattttctcttccctctttgtgtctcaacctttagatcaa 372  Q
    ||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||    
T  45623296 aggatagacttttctctctcccctaattttctcttccctc--tgtgtctcaacctttagatcaa 45623235  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 316 - 369
Target Start/End: Complemental strand, 9809522 - 9809470
Alignment:
Q  316 acttttctttctcccctaattttctcttccctctttgtgtctcaacctttagat 369  Q
    |||||||| ||||| |||||||||||||||||| ||||||||||||||||||||    
T  9809522 acttttctctctcctctaattttctcttccctc-ttgtgtctcaacctttagat 9809470  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 316 - 372
Target Start/End: Complemental strand, 16248507 - 16248453
Alignment:
Q  316 acttttctttctcccctaattttctcttccctctttgtgtctcaacctttagatcaa 372  Q
    |||||||| ||||| ||||||||||||||||||  || |||||||||||||||||||    
T  16248507 acttttctctctcctctaattttctcttccctc--tgcgtctcaacctttagatcaa 16248453  T

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Target: chr5 (Bit Score: 117; Significance: 3e-59; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 29846975 - 29847154
Alignment:
Q  18 agctttaacagtggcagtctactagctttggtggtgtatgctaagatacaatttaaactcaaaggatcacaagttttgatgaggtctgcattattaaaga 117  Q
    |||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  29846975 agctttaacagtggtaatctactagctt-ggtggtgtatgctaagatacaatttaaactcaaaggatcacaagttttgatgagggctgcattattaaaga 29847073  T
Q  118 gtaggcggataaaactgaaactcagaa-gnnnnnnnntgtgattgcttgttttacaaactcaaagtgagatattttatagg 197  Q
    ||| | ||||||||||||||||||||| |        ||||||||||||||||||||||||||||||||| ||||||||||    
T  29847074 gtaaggggataaaactgaaactcagaaggaaaaaaattgtgattgcttgttttacaaactcaaagtgagagattttatagg 29847154  T

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Target: chr5; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 29867169 - 29867346
Alignment:
Q  18 agctttaacagtggcagtctactagctttggtggtgtatgctaagatacaatttaaactcaaaggatcacaagttttgatgaggtctgcattattaaaga 117  Q
    |||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  29867169 agctttaacagtggtaatctactagctt-ggtggtgtatgctaagatacaatttaaactcaaaggatcgcaagttttgatgagggctgcattattaaaga 29867267  T
Q  118 gtaggcggataaaactgaaactcagaa-gnnnnnnnntgtgattgcttgttttacaaactcaaagtgagatattttata 195  Q
    ||| | ||||||||||||||||||||| |        ||||||||||||||||||||||||||||||||| ||||||||    
T  29867268 gtaaggggataaaactgaaactcagaaggaaaaaaattgtgattgcttgttttacaaactcaaagtgagagattttata 29867346  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 325 - 372
Target Start/End: Original strand, 27128904 - 27128951
Alignment:
Q  325 tctcccctaattttctcttccctctttgtgtctcaacctttagatcaa 372  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  27128904 tctcctctaattttctctttcctctttgtgtctcaacctttagatcaa 27128951  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 316 - 372
Target Start/End: Original strand, 31888821 - 31888875
Alignment:
Q  316 acttttctttctcccctaattttctcttccctctttgtgtctcaacctttagatcaa 372  Q
    |||||||| ||||| ||||||||||||||||||  || |||||||||||||||||||    
T  31888821 acttttctctctcctctaattttctcttccctc--tgcgtctcaacctttagatcaa 31888875  T

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