View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19021_low_4 (Length: 279)
Name: NF19021_low_4
Description: NF19021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19021_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 7e-95; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 5731647 - 5731464
Alignment:
| Q |
1 |
taactttttagggaggcagacatgggagtttgatccaaatgctggtacttctgaggaaagagctcaagttgaaaaagcacgtcaacatttctataacaat |
100 |
Q |
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| T |
5731647 |
taactttttagggaggcagacatgggagtttgatccaaatgctggtacttctgaggagagagctcaagttgaaaaagcacgtcaacatttctataacaat |
5731548 |
T |
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| Q |
101 |
cgtttcaaagttaaaccctgcagtgaccttctttggcgctttcaggtaattatattttcttgtaatgggaatcctctcaatttt |
184 |
Q |
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| T |
5731547 |
cgtttcaaagttaaaccctgcagtgaccttctttggcgctttcaggtaattatattttcttgtaataggaatcctctcaatttt |
5731464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 5701058 - 5700906
Alignment:
| Q |
1 |
taactttttagggaggcagacatgggagtttgatccaaatgctggtacttctgaggaaagagctcaagttgaaaaagcacgtcaacatttctataacaat |
100 |
Q |
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| T |
5701058 |
taactttttagggaggcagacatgggagtttgatccaaatgctggtacttctgaggagagagctcaagttgaaaaagcacgtcaacatttctataacaat |
5700959 |
T |
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| Q |
101 |
cgtttcaaagttaaaccctgcagtgaccttctttggcgctttcaggtaattat |
153 |
Q |
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| T |
5700958 |
cgtttcaaagttaagccctgcagtgaccttctttggcgttttcaggtaattat |
5700906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 5681005 - 5680853
Alignment:
| Q |
1 |
taactttttagggaggcagacatgggagtttgatccaaatgctggtacttctgaggaaagagctcaagttgaaaaagcacgtcaacatttctataacaat |
100 |
Q |
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| T |
5681005 |
taactttgtggggaggcagacatgggagtttgatgctgatgctggtactcctgaggagagatctcaagttgaaaaagcacgtcaacatttctatgacaat |
5680906 |
T |
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| Q |
101 |
cgtttcaaagttaaaccctgcagtgaccttctttggcgctttcaggtaattat |
153 |
Q |
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| T |
5680905 |
cgtttcaaagttaagccctgcagtgaccttctttggcgctttcaggtaattat |
5680853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 179 - 279
Target Start/End: Complemental strand, 5731433 - 5731333
Alignment:
| Q |
179 |
aattttaactccattaattatttatttatcaacctaccatcaattatgttacatcattttctacgaaaaatactagacttaattacacttttggtccttg |
278 |
Q |
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| T |
5731433 |
aattttaactccattaattatttatttatcaacctaccttcaattatgttacatcattttctacgataaatattagacttaattatactttttgtcattg |
5731334 |
T |
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| Q |
279 |
c |
279 |
Q |
| |
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| |
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| T |
5731333 |
c |
5731333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 2 - 153
Target Start/End: Complemental strand, 5673355 - 5673204
Alignment:
| Q |
2 |
aactttttagggaggcagacatgggagtttgatccaaatgctggtacttctgaggaaagagctcaagttgaaaaagcacgtcaacatttctataacaatc |
101 |
Q |
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|||||| | ||||||||||||||||||||||||| ||||||||||| ||||||| || ||||||||||||| || | | || |||||||| |||| |
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| T |
5673355 |
aactttgtggggaggcagacatgggagtttgatcttgatgctggtactcctgaggagagggctcaagttgaaacggctcataaaaatttctatgacaact |
5673256 |
T |
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| Q |
102 |
gtttcaaagttaaaccctgcagtgaccttctttggcgctttcaggtaattat |
153 |
Q |
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| T |
5673255 |
gtttctatgttaagccctgcagtgaccttctttggcgctttcaggtaattat |
5673204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 11 - 153
Target Start/End: Complemental strand, 5694906 - 5694763
Alignment:
| Q |
11 |
gggaggcaga-catgggagtttgatccaaatgctggtacttctgaggaaagagctcaagttgaaaaagcacgtcaacatttctataacaatcgtttcaaa |
109 |
Q |
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|||||||||| |||||||||||||||| ||||||||||| ||||||| |||||||||||||||| || ||| || |||||||| |||| | ||||||| |
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| T |
5694906 |
gggaggcagatcatgggagtttgatcctgatgctggtactcctgaggagagagctcaagttgaaacggctcgtaaaaatttctatgacaaccatttcaaa |
5694807 |
T |
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| Q |
110 |
gttaaaccctgcagtgaccttctttggcgctttcaggtaattat |
153 |
Q |
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||||| ||||| ||||||||||| |||||||| ||||| |||| |
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| T |
5694806 |
gttaagccctgtagtgaccttctgcggcgcttttaggtagttat |
5694763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 153
Target Start/End: Complemental strand, 5725202 - 5725065
Alignment:
| Q |
11 |
gggaggcagacatgggagtttgatccaaatgctggtacttctgaggaaagagctcaagttgaaaaagcacgtcaacatttcta-taacaatcgtttcaaa |
109 |
Q |
| |
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|||||| ||||||||||||||||||| ||||||||||| ||||| ||||||||| || | || ||| || ||||||| | |||||||||||||| |
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| T |
5725202 |
gggaggtagacatgggagtttgatcctgatgctggtact---gaggagagagctcaaatt---acggctcgtaaaaatttctaatgacaatcgtttcaaa |
5725109 |
T |
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| Q |
110 |
gttaaaccctgcagtgaccttctttggcgctttcaggtaattat |
153 |
Q |
| |
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||||| ||||| ||||||||| || |||| |||||||| |||| |
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| T |
5725108 |
gttaagccctgtggtgaccttccttagcgcgttcaggtagttat |
5725065 |
T |
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