View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19022_low_1 (Length: 624)
Name: NF19022_low_1
Description: NF19022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19022_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 9 - 473
Target Start/End: Original strand, 12641181 - 12641641
Alignment:
| Q |
9 |
gaagaatatacatactacatataaaaatattggaaatgaaagagaaacaacgggg-agagaagaatgcagaaatcgccgatttgagaggatatacacaaa |
107 |
Q |
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| T |
12641181 |
gaagaaaatacatactacatataaaaatattggaaatgaaagagaaatgacgggggagagaagaatgcagaaatcaccgatttgagaggatatacacaaa |
12641280 |
T |
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| Q |
108 |
taaaattcaatttcttttaaaggtttagaggaaaatattcccatttcaaatctaatcgtcgatcttcctacgcgtgaactgaactaatcgtcaacaatat |
207 |
Q |
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| T |
12641281 |
taaaattcaatttcttttaaaggtttagaagaaaatattcccatttcaaatctaatcgtctatcttcctacgcgtgaactgaactaatcgtcaacaatat |
12641380 |
T |
|
| Q |
208 |
gtagaggcagaaaaacttgtatatgaaaagttaagaatgtgttttctgaaccatttnnnnnnnnnnnnttaaattattacgtcnnnnnnnggcgggaatc |
307 |
Q |
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| T |
12641381 |
gtagaggcggaaaaacttctatatg-aaagttaagaatgtgttttcttaaccattt----aaaaaaaattaaattattacgtctttttttggcgggaatc |
12641475 |
T |
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| Q |
308 |
acgggcatgttattgtgtaaatcaactgctcaaaaatattcttgtgtctcttcaaagtgtctttgtaggaaagaacaatttcaataaaataaaatcatac |
407 |
Q |
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| T |
12641476 |
acgggcatgttattgtgtaaatcaactggtcaaaaatattcttgtgtctcttcaaagtgtctttgtaggaaagaacaatttcaataaaataaaatcatac |
12641575 |
T |
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| Q |
408 |
caatgtggataatgagaataggaaaatacctaggtctcagtatcataagacaacgaaattttagac |
473 |
Q |
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| T |
12641576 |
caatgtggataatgagaataggaaaatacctaggtctcaatatcataagacaacgaaattttagac |
12641641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 486 - 605
Target Start/End: Original strand, 12641682 - 12641802
Alignment:
| Q |
486 |
cacttatttgctaacatgctttctcaaacaatgtaggggtgtggatagtagaaatccatcattatctttctca-tttttgtttctgacttgggactttgt |
584 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||| || |
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| T |
12641682 |
cacttatttgctaacatgctttctcaaacaatgtaggggtgtggatagtagaaatccatcattatctttctcattttttttttctgacttgggccttagt |
12641781 |
T |
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| Q |
585 |
tctttttctcaatttaatatg |
605 |
Q |
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| T |
12641782 |
tctttttctcaatttaatatg |
12641802 |
T |
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