View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19022_low_2 (Length: 576)

Name: NF19022_low_2
Description: NF19022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19022_low_2
NF19022_low_2
[»] chr3 (13 HSPs)
chr3 (18-427)||(224717-225126)
chr3 (33-317)||(210345-210632)
chr3 (26-317)||(221893-222184)
chr3 (424-561)||(224549-224689)
chr3 (26-317)||(216948-217239)
chr3 (109-317)||(197070-197278)
chr3 (109-317)||(204915-205123)
chr3 (172-270)||(198274-198372)
chr3 (172-278)||(226108-226214)
chr3 (172-278)||(211665-211771)
chr3 (104-270)||(203516-203682)
chr3 (453-504)||(216723-216774)
chr3 (109-146)||(226240-226277)
[»] chr5 (1 HSPs)
chr5 (26-317)||(29838223-29838514)
[»] chr4 (2 HSPs)
chr4 (109-317)||(6903370-6903578)
chr4 (104-270)||(6904803-6904969)
[»] chr1 (1 HSPs)
chr1 (104-291)||(3808344-3808532)


Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 18 - 427
Target Start/End: Complemental strand, 225126 - 224717
Alignment:
Q  18 atgggagagaactaaagaatgtcgctacaattattgtaccggatggtcttacttggaaattggaattgaagaaacgtggggaggatgtttacttttgcaa 117  Q
    ||||||| ||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  225126 atgggagcgaactcaagaatgttgctacaattactgtaccggatggtcttacttggaaattggaattgaagaaacgtggggaggatgtttacttttgcaa 225027  T
Q  118 caaatggaaacagtttgcagaatactattctttaagatacggttgcttcatgtctttcaaatatgaagggaattcaaagtttaatgttattatatttgat 217  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  225026 caaatggaaacaatttgcagaatactattctttaagatatggttgcttcatgtctttcaaatatgaagggaattcaaagtttagtgttattatatttgat 224927  T
Q  218 gtaacttctgttgagatttgctatccattaaaaactccaagtactagtggagaaacaaacaccaagtgtcctaggcctatgaaaaggtccagggttgaaa 317  Q
    ||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||  |||||||||| |||| ||||||||||||||||||||    
T  224926 gtaacttctgttgagatttgctatccactcaaaactccaagtactaatggagaaacaaacacagagtgtcctagacctacgaaaaggtccagggttgaaa 224827  T
Q  318 tcaattatgctgatgattcaccaagtgaggatgaaggaacagaattaaacccttcttttacttctacctataagtatagaactctggtgagtgaggattt 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  224826 tcaattatgctgatgattcaccaagtgaggatgaaggaacagaattaaacccttcttttacttctacctataagtatagaactctggtgagtgaggattt 224727  T
Q  418 tagtttttaa 427  Q
    ||||||||||    
T  224726 tagtttttaa 224717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 33 - 317
Target Start/End: Complemental strand, 210632 - 210345
Alignment:
Q  33 agaatgtcgctacaattattgtaccggatggtcttacttggaaattggaattgaagaaacgtggggaggatgtttacttttgcaacaa---atggaaaca 129  Q
    ||||||| |||||| ||| ||| || ||||||  |  |||| || |||| ||||||||| |||| |||||||||||||||||||||||   |||| ||||    
T  210632 agaatgttgctacagttactgttcccgatggttgtgattgggaaatggacttgaagaaatgtggcgaggatgtttacttttgcaacaaggaatggcaaca 210533  T
Q  130 gtttgcagaatactattctttaagatacggttgcttcatgtctttcaaatatgaagggaattcaaagtttaatgttattatatttgatgtaacttctgtt 229  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||| ||||  |||||||||||||||| ||||||||||    
T  210532 gtttgcagaatactattctttaagatacggttgcttcctgtctttcagatacgaagggaattcaaattttagcgttattatatttgatgcaacttctgtt 210433  T
Q  230 gagatttgctatccattaaaaactccaagtactagtggagaaacaaacaccaagtgtcctaggcctatgaaaaggtccagggttgaaa 317  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  210432 gaaatttgctatccattaaaaactccaagtactagtggagaaacaaacaccgagtgtcctaggcctatgaaaaggtccaaggttgaaa 210345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 26 - 317
Target Start/End: Complemental strand, 222184 - 221893
Alignment:
Q  26 gaactaaagaatgtcgctacaattattgtaccggatggtcttacttggaaattggaattgaagaaacgtggggaggatgtttacttttgcaacaaatgga 125  Q
    ||||| |||||||| |||||||||| ||| || |||||   |  |||| || ||||| |||||||| | ||  | || |||||||||||||||||||||     
T  222184 gaactcaagaatgttgctacaattactgttcccgatggctgtgattgggaaatggaactgaagaaatgcggcaacgacgtttacttttgcaacaaatggc 222085  T
Q  126 aacagtttgcagaatactattctttaagatacggttgcttcatgtctttcaaatatgaagggaattcaaagtttaatgttattatatttgatgtaacttc 225  Q
    ||||||||||||||||||||||| || | || |||| |||| ||  |||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  222084 aacagtttgcagaatactattctatagggtatggttccttcttgcgtttcaaatatgaaggggattcaaagtttaatgttgttatatttgatgtaacttc 221985  T
Q  226 tgttgagatttgctatccattaaaaactccaagtactagtggagaaacaaacaccaagtgtcctaggcctatgaaaaggtccagggttgaaa 317  Q
    ||||||||||||||||||||| ||||||| ||||| || ||||||||||||||| ||||||| ||| |||| ||||||||||| ||||||||    
T  221984 tgttgagatttgctatccattcaaaactcaaagtattaatggagaaacaaacacaaagtgtcatagtcctaggaaaaggtccaaggttgaaa 221893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 424 - 561
Target Start/End: Complemental strand, 224689 - 224549
Alignment:
Q  424 ttaaattgatgtgtcctccctcgctcccttgtgcagtatattaatgctgattttgcatcaaagcatctgaaacgaaatgttgttgtgaagctcgaaaatt 523  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  224689 ttaaattgatgtgtcctacctcgctcccttgtgcagtatattaatgctgattttgcatcaaagcatctgaaacgaaatgttgttgtgaagctccaaaatt 224590  T
Q  524 gcaat---ggagagcaatgggatgtttgttgtacacgttta 561  Q
    |||||   |||||||||||||||||||||||||||||||||    
T  224589 gcaatggaggagagcaatgggatgtttgttgtacacgttta 224549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 26 - 317
Target Start/End: Complemental strand, 217239 - 216948
Alignment:
Q  26 gaactaaagaatgtcgctacaattattgtaccggatggtcttacttggaaattggaattgaagaaacgtggggaggatgtttacttttgcaacaaatgga 125  Q
    ||||| |||||||| |||||||||| ||| || ||||||  |  |||| || || || |||||||| | ||  | || |||||||||||||||||||||     
T  217239 gaactcaagaatgttgctacaattactgttcccgatggttgtgattgggaaatgaaactgaagaaatgcggcaatgacgtttacttttgcaacaaatggc 217140  T
Q  126 aacagtttgcagaatactattctttaagatacggttgcttcatgtctttcaaatatgaagggaattcaaagtttaatgttattatatttgatgtaacttc 225  Q
    ||||||||||||||||||||||| || | || |||| |||| ||| |||||||||||||||| |||||||||||| |||  |||||||||||| ||||||    
T  217139 aacagtttgcagaatactattctatagggtatggttccttcctgtgtttcaaatatgaaggggattcaaagtttagtgtctttatatttgatgcaacttc 217040  T
Q  226 tgttgagatttgctatccattaaaaactccaagtactagtggagaaacaaacaccaagtgtcctaggcctatgaaaaggtccagggttgaaa 317  Q
    | ||||||||||||||||||| ||||||| |||||| | |||||||||||| || |||| || ||| |||| ||||||||||| ||||||||    
T  217039 tattgagatttgctatccattcaaaactcaaagtacaaatggagaaacaaaaacaaagtttcatagtcctaggaaaaggtccaaggttgaaa 216948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 109 - 317
Target Start/End: Complemental strand, 197278 - 197070
Alignment:
Q  109 cttttgcaacaaatggaaacagtttgcagaatactattctttaagatacggttgcttcatgtctttcaaatatgaagggaattcaaagtttaatgttatt 208  Q
    ||||| |||| ||||| || |||| ||| |||||||||| ||| | || ||||||| | | ||||||||||| ||||||||||||||||||| |||||||    
T  197278 cttttccaacgaatgggaagagttcgcaaaatactattcattagggtatggttgctacctatctttcaaatacgaagggaattcaaagtttagtgttatt 197179  T
Q  209 atatttgatgtaacttctgttgagatttgctatccattaaaaactccaagtactagtggagaaacaaacaccaagtgtcctaggcctatgaaaaggtcca 308  Q
    |||||||| ||||||| |||||||||||| |||||||||||||||||||||  || ||||||| ||||||| || ||| |||| |||| |||||||||||    
T  197178 atatttgacgtaacttatgttgagatttgttatccattaaaaactccaagtgttaatggagaaccaaacacaaaatgtgctagtcctacgaaaaggtcca 197079  T
Q  309 gggttgaaa 317  Q
     ||||||||    
T  197078 aggttgaaa 197070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 109 - 317
Target Start/End: Original strand, 204915 - 205123
Alignment:
Q  109 cttttgcaacaaatggaaacagtttgcagaatactattctttaagatacggttgcttcatgtctttcaaatatgaagggaattcaaagtttaatgttatt 208  Q
    ||||| |||| ||||| || |||||||| |||||||||| ||| |||  ||||||| | | ||||||||||| ||||| ||||||||||||| |||| ||    
T  204915 cttttacaacgaatggcaagagtttgcaaaatactattcgttaggatgtggttgctacctatctttcaaatacgaaggaaattcaaagtttagtgttgtt 205014  T
Q  209 atatttgatgtaacttctgttgagatttgctatccattaaaaactccaagtactagtggagaaacaaacaccaagtgtcctaggcctatgaaaaggtcca 308  Q
    ||||||||||||||||| |||||||||||||||||| | |||||||| ||||||| |||||||||||| ||  | |||||||  ||||  ||||| || |    
T  205015 atatttgatgtaacttcggttgagatttgctatccactcaaaactccgagtactaatggagaaacaaatacacaatgtcctactcctagaaaaagttcaa 205114  T
Q  309 gggttgaaa 317  Q
    |||||||||    
T  205115 gggttgaaa 205123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 172 - 270
Target Start/End: Complemental strand, 198372 - 198274
Alignment:
Q  172 tttcaaatatgaagggaattcaaagtttaatgttattatatttgatgtaacttctgttgagatttgctatccattaaaaactccaagtactagtggaga 270  Q
    |||||| ||| ||||||||||||||||||||||| |||||| ||||  |||||||||||||||||  ||| |||| |||||||||||||||| ||||||    
T  198372 tttcaactatcaagggaattcaaagtttaatgttgttatatatgatacaacttctgttgagatttcttattcattcaaaactccaagtactaatggaga 198274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 172 - 278
Target Start/End: Complemental strand, 226214 - 226108
Alignment:
Q  172 tttcaaatatgaagggaattcaaagtttaatgttattatatttgatgtaacttctgttgagatttgctatccattaaaaactccaagtactagtggagaa 271  Q
    ||||||||||||||||||||||||||| |||||| ||||||  |||  |||||||||||||||||  ||||||||  ||||||  || |||| |||||||    
T  226214 tttcaaatatgaagggaattcaaagttcaatgttgttatatacgatagaacttctgttgagatttcttatccattccaaactcggaggactaatggagaa 226115  T
Q  272 acaaaca 278  Q
     ||||||    
T  226114 ccaaaca 226108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 172 - 278
Target Start/End: Complemental strand, 211771 - 211665
Alignment:
Q  172 tttcaaatatgaagggaattcaaagtttaatgttattatatttgatgtaacttctgttgagatttgctatccattaaaaactccaagtactagtggagaa 271  Q
    ||||||||| ||||||||||||||||| |||||| ||||||  |||  |||||||||||||||||  ||||||||  ||||||  || |||| |||||||    
T  211771 tttcaaatacgaagggaattcaaagttcaatgttgttatatacgatacaacttctgttgagatttcttatccattccaaactcggaggactaatggagaa 211672  T
Q  272 acaaaca 278  Q
     ||||||    
T  211671 gcaaaca 211665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 104 - 270
Target Start/End: Original strand, 203516 - 203682
Alignment:
Q  104 gtttacttttgcaacaaatggaaacagtttgcagaatactattctttaagatacggttgcttcatgtctttcaaatatgaagggaattcaaagtttaatg 203  Q
    |||| |||||||||||| ||| |||| |||||||||||||||||  | || |||||||| |   |   |||||| |||||||| |||||||| ||    |    
T  203516 gttttcttttgcaacaattggcaacactttgcagaatactattccatcagttacggttgttatttagatttcaagtatgaaggaaattcaaatttcgtag 203615  T
Q  204 ttattatatttgatgtaacttctgttgagatttgctatccattaaaaactccaagtactagtggaga 270  Q
    || |||||| ||||  ||||| |||||||||||  |||||||| |||||| ||||||||| ||||||    
T  203616 ttgttatatatgatccaacttttgttgagatttcttatccattcaaaacttcaagtactaatggaga 203682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 453 - 504
Target Start/End: Complemental strand, 216774 - 216723
Alignment:
Q  453 tgtgcagtatattaatgctgattttgcatcaaagcatctgaaacgaaatgtt 504  Q
    |||||||||| |||||||||||||||| |||||||||||||| | |||||||    
T  216774 tgtgcagtatgttaatgctgattttgcttcaaagcatctgaatccaaatgtt 216723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 146
Target Start/End: Complemental strand, 226277 - 226240
Alignment:
Q  109 cttttgcaacaaatggaaacagtttgcagaatactatt 146  Q
    |||||||||||| ||| |||||||||||||||||||||    
T  226277 cttttgcaacaattggcaacagtttgcagaatactatt 226240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 128; Significance: 7e-66; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 26 - 317
Target Start/End: Complemental strand, 29838514 - 29838223
Alignment:
Q  26 gaactaaagaatgtcgctacaattattgtaccggatggtcttacttggaaattggaattgaagaaacgtggggaggatgtttacttttgcaacaaatgga 125  Q
    ||||| || ||||| |||||||||| ||| || ||||||| |   |||||| ||||| ||||||||||||| ||| |||||| ||||||||||||||||     
T  29838514 gaactcaataatgttgctacaattactgttccagatggtcgtgtatggaaaatggaactgaagaaacgtggcgagaatgttttcttttgcaacaaatggc 29838415  T
Q  126 aacagtttgcagaatactattctttaagatacggttgcttcatgtctttcaaatatgaagggaattcaaagtttaatgttattatatttgatgtaacttc 225  Q
    || |||||| |||||| |||||| || |||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  29838414 aagagtttgtagaatattattctataggatatggttgcttcatttctttcaaatatgaagggaattcaaagtttagtgttattatatttgatgcaacttc 29838315  T
Q  226 tgttgagatttgctatccattaaaaactccaagtactagtggagaaacaaacaccaagtgtcctaggcctatgaaaaggtccagggttgaaa 317  Q
    |||||| |||| |||||| ||  ||||||||||||||| ||||||| |||| || || | ||||||  |||  |||||||||| ||||||||    
T  29838314 tgttgaaatttcctatcctttcgaaactccaagtactaatggagaaccaaaaacaaattatcctagttctagaaaaaggtccaaggttgaaa 29838223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 109 - 317
Target Start/End: Complemental strand, 6903578 - 6903370
Alignment:
Q  109 cttttgcaacaaatggaaacagtttgcagaatactattctttaagatacggttgcttcatgtctttcaaatatgaagggaattcaaagtttaatgttatt 208  Q
    ||||| |||| ||||| || |||||||| |||||||||| ||| |||| ||||||| | | ||||||||||| ||||| ||||||||||||| |||||||    
T  6903578 cttttacaacgaatggcaagagtttgcaaaatactattcattaggatatggttgctacctatctttcaaatacgaaggaaattcaaagtttagtgttatt 6903479  T
Q  209 atatttgatgtaacttctgttgagatttgctatccattaaaaactccaagtactagtggagaaacaaacaccaagtgtcctaggcctatgaaaaggtcca 308  Q
    ||||||||||||||||| |||||||||||||||||| | |||||||| ||||||| |||||||||||| ||  | |||||||  ||||  ||||| ||||    
T  6903478 atatttgatgtaacttcggttgagatttgctatccactcaaaactccgagtactaatggagaaacaaatacacaatgtcctactcctagaaaaagttcca 6903379  T
Q  309 gggttgaaa 317  Q
    |||||||||    
T  6903378 gggttgaaa 6903370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 104 - 270
Target Start/End: Complemental strand, 6904969 - 6904803
Alignment:
Q  104 gtttacttttgcaacaaatggaaacagtttgcagaatactattctttaagatacggttgcttcatgtctttcaaatatgaagggaattcaaagtttaatg 203  Q
    |||| |||||||||||| ||| |||| |||||||||||||||||  | || ||| |||| |   |   |||||| ||||||| ||||||||| ||    |    
T  6904969 gttttcttttgcaacaattggcaacactttgcagaatactattccatcagttacagttgttatttagatttcaagtatgaagagaattcaaatttcgtag 6904870  T
Q  204 ttattatatttgatgtaacttctgttgagatttgctatccattaaaaactccaagtactagtggaga 270  Q
    || |||||| ||||  ||||| |||||||||||  |||||||| |||||||||||||||| ||||||    
T  6904869 ttgttatatatgatccaacttttgttgagatttcttatccattcaaaactccaagtactaatggaga 6904803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 104 - 291
Target Start/End: Complemental strand, 3808532 - 3808344
Alignment:
Q  104 gtttacttttgcaacaaatggaaacagtttgcagaatactattctttaagatacggttgcttcatgtctttcaaatatgaagggaattc-aaagtttaat 202  Q
    |||| |||||||||||||||| || ||||   ||||||||| ||  || |||| ||||| | | | |||||||| |||||||| ||||| |||||||| |    
T  3808532 gttttcttttgcaacaaatggcaagagttcatagaatactactcaataggatatggttggtacctttctttcaattatgaaggaaattccaaagtttagt 3808433  T
Q  203 gttattatatttgatgtaacttctgttgagatttgctatccattaaaaactccaagtactagtggagaaacaaacaccaagtgtcctag 291  Q
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T  3808432 gttattatatttgacgtaacttctgttgggatttgctatccgttcaaaactccaagtactaatagagaaccaaacacaaagtatcctag 3808344  T

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