View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19022_low_3 (Length: 515)
Name: NF19022_low_3
Description: NF19022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19022_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-144; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 20 - 292
Target Start/End: Original strand, 15274951 - 15275225
Alignment:
| Q |
20 |
ccgcaatctccaatgctacattccatcatatttgctagcagcacaatagtgagtgatataacaggaaacttctattcttgaaaaaggaaggagtgagtgt |
119 |
Q |
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| T |
15274951 |
ccgcaatctccaatgctacattccatcatatttgctagcagcacaatagtgagtgatataacaggaaacttctattcttgaaaaaggaaggagtgagtgt |
15275050 |
T |
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| Q |
120 |
ataagatcaggatttggaatgttaaattaccaacgagataggaatgatacttgaatactcaaattgtaaagcagatactgcttgtaaataataaaacagg |
219 |
Q |
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| T |
15275051 |
ataagatcaggatttggaatgttaaattaccaacgagataggaataatacttgaatactcaaattgtaaagcagatactgcttgtaaataataaaacagg |
15275150 |
T |
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| Q |
220 |
tacctacttcccctaaacct--aggtttcctatacaattatcttctccttccaactctcacgttataaatacact |
292 |
Q |
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| T |
15275151 |
tacctacttcccctaaacctggaggtttcctatacaattatcttctccttccaactctcacgttataaatacact |
15275225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 360 - 496
Target Start/End: Original strand, 15275291 - 15275427
Alignment:
| Q |
360 |
gaacacacaaagtctctcttttattcctctctctttgttgcatgatgaccacggtgtacagaaccttagaactcgacattatttccgcaaaagatctaaa |
459 |
Q |
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| T |
15275291 |
gaacacacaaaatctctcttttattcctctctctttgttgcatgatgaccacggtgtacagaaccttagaactcgacattatttccgcaaaagatctaaa |
15275390 |
T |
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| Q |
460 |
agatgttaatcttttcccccagatgtccgtatacgcc |
496 |
Q |
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| T |
15275391 |
agatgttaatcttttctcccagatgtccgtatacgcc |
15275427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 40 - 163
Target Start/End: Original strand, 15250882 - 15251005
Alignment:
| Q |
40 |
ttccatcatatttgctagcagcacaatagtgagtgatataacaggaaacttctattcttgaaaaaggaaggagtgagtgta----taagatcaggatttg |
135 |
Q |
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| T |
15250882 |
ttccatcatatttgctagcagcacaatagtga----taaaacaggaaacttctatgcttgaaaaaggaaggagggagtctaaaattaagatcaggatttg |
15250977 |
T |
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| Q |
136 |
gaatgttaaattaccaacgagataggaa |
163 |
Q |
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| T |
15250978 |
gaatactaaattaccaacgagataggaa |
15251005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 387 - 496
Target Start/End: Original strand, 15263686 - 15263795
Alignment:
| Q |
387 |
tctctctttgttgcatgatgaccacggtgtacagaaccttagaactcgacattatttccgcaaaagatctaaaagatgttaatcttttcccccagatgtc |
486 |
Q |
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| T |
15263686 |
tctctctctgttgcatgatgaccaccgtgtacagaaccttagaactcaacatgatttccgcaaaagatctcaaagatgttaatattttcccacaaatatc |
15263785 |
T |
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| Q |
487 |
cgtatacgcc |
496 |
Q |
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| T |
15263786 |
tgtatacgcc |
15263795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 419 - 484
Target Start/End: Complemental strand, 14431527 - 14431462
Alignment:
| Q |
419 |
agaaccttagaactcgacattatttccgcaaaagatctaaaagatgttaatcttttcccccagatg |
484 |
Q |
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| T |
14431527 |
agaaccttagaactcaacatcatatccgctaaagatctcaaaaatgttaatcttttctccaagatg |
14431462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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