View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19022_low_4 (Length: 434)
Name: NF19022_low_4
Description: NF19022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19022_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 13 - 283
Target Start/End: Original strand, 12641376 - 12641641
Alignment:
| Q |
13 |
aatatgtagaggcagaaaaacttgtatatgaaaagttaagaatgtgttttctgaaccatttnnnnnnnnnnnnttaaattattacgtcnnnnnnnggcgg |
112 |
Q |
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| T |
12641376 |
aatatgtagaggcggaaaaacttctatatgaaa-gttaagaatgtgttttcttaaccatttaaaaaaaa----ttaaattattacgtctttttttggcgg |
12641470 |
T |
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| Q |
113 |
gaatcacgggcatgttattgtgtaaatcaactgctcaaaaatattcttgtgtctcttcaaagtgtctttgtaggaaagaacaatttcaataaaataaaat |
212 |
Q |
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| T |
12641471 |
gaatcacgggcatgttattgtgtaaatcaactggtcaaaaatattcttgtgtctcttcaaagtgtctttgtaggaaagaacaatttcaataaaataaaat |
12641570 |
T |
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| Q |
213 |
cataccaatgtggataatgagaataggaaaatacctaggtctcagtatcataagacaacgaaattttagac |
283 |
Q |
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| T |
12641571 |
cataccaatgtggataatgagaataggaaaatacctaggtctcaatatcataagacaacgaaattttagac |
12641641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 296 - 415
Target Start/End: Original strand, 12641682 - 12641802
Alignment:
| Q |
296 |
cacttatttgctaacatgctttctcaaacaatgtaggggtgtggatagtagaaatccatcattatctttctca-tttttgtttctgacttgggactttgt |
394 |
Q |
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| T |
12641682 |
cacttatttgctaacatgctttctcaaacaatgtaggggtgtggatagtagaaatccatcattatctttctcattttttttttctgacttgggccttagt |
12641781 |
T |
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| Q |
395 |
tctttttctcaatttaatatg |
415 |
Q |
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| T |
12641782 |
tctttttctcaatttaatatg |
12641802 |
T |
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