View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19022_low_5 (Length: 419)
Name: NF19022_low_5
Description: NF19022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19022_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 13 - 400
Target Start/End: Complemental strand, 306574 - 306181
Alignment:
| Q |
13 |
aatatcacataaagtagttacctataaccaataaccaatacaatacatatctggaaggcatgctcctgttaagtttttcggtcacgagattgagcctcca |
112 |
Q |
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| T |
306574 |
aatatcacataaagtagttacctataaccaataaccaatacaatacatatctggaaggcatgctcctgttaagtttttcggtcacgagattgagcctcca |
306475 |
T |
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| Q |
113 |
atcaccgattg----taaagtaagtctcatcatgttaaatgataagaccccataaacacactaccaaaaagtgtatnnnnnnnnn--gcttctgttgcca |
206 |
Q |
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| T |
306474 |
atcaccgattgattgtaaagtaagtctcatcatgttaaatgataagaccccataaacacactaccaaaaagtgtataaaaaaaaaaagcttctgttgcca |
306375 |
T |
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| Q |
207 |
tcttcacattttcccaaccaactagcatattaaataaacttagaattatcacatgaatgccataaatatgtgaatcatacaactatatccaagataatat |
306 |
Q |
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| T |
306374 |
tcttcacattttcccaaccaattagcatattaaataaacttagaattatcacatgaatgccataaatatgtgaatcatacaactatatccaagataatat |
306275 |
T |
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| Q |
307 |
aagaatgcagtccatatacggtcatttgtgtcagaatcgtttgagttcactaagatgaagcattttatttttacattcacgtgtatatggctga |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
306274 |
aagaatgcagtccatatacggtcatttgtgtcagaatcgtttgagttcactaagatgaagcattttattttcacattcacgtgtatatggctga |
306181 |
T |
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