View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19022_low_8 (Length: 264)
Name: NF19022_low_8
Description: NF19022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19022_low_8 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 13 - 264
Target Start/End: Original strand, 39248194 - 39248456
Alignment:
| Q |
13 |
aatatgcactagaatgttacagtatgcattaaatagagctttaaaaaatttattccaagaataacaaaggatttatagtataacaacctatgcagcacca |
112 |
Q |
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| T |
39248194 |
aatatgcactagaatgttacagtatgcattaaatagagctttaaaaaatttattccaagaataacaaaggatttatagtataacaacctatgcagcacca |
39248293 |
T |
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| Q |
113 |
acattttagattgaaagtgcgtctggggtccgacacaggcatgtatacactcaattcaatcaatttcattttctgaaatatattttcagtgtcta----- |
207 |
Q |
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| T |
39248294 |
acattttagattgaaagtgcgtctggagtccgacacaggcatgtatacactcaattcaatcaatttcattttctgaaatatattttcagtgtctacatgt |
39248393 |
T |
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| Q |
208 |
------tgtcagtgttgtgaccgatgtcggtatcaatgttccacacatagccaggactgtttc |
264 |
Q |
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| T |
39248394 |
tgttgttgtcagtgttgtgaccgatgtcggtatcaatgttccacacatagccaggactgtttc |
39248456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 39245471 - 39245642
Alignment:
| Q |
17 |
tgcactagaatgttacagtatgcattaaatagagctttaaaaaatttattccaagaataacaaaggatttatagtataacaacctatgcagcaccaacat |
116 |
Q |
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|||||| |||||||||| ||||| |||||||||||||||| | || |||| ||||| |||||||||||| ||||| | ||||||||||||||||||||| |
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| T |
39245471 |
tgcacttgaatgttacaatatgccttaaatagagctttaatattttcattctaagaacaacaaaggatttgtagtaaagcaacctatgcagcaccaacat |
39245570 |
T |
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| Q |
117 |
tttagattgaaagtgcgtctggggtccgacacaggcatgtatacactcaattcaatcaatttcattttctgaaat |
191 |
Q |
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| T |
39245571 |
tttagattgaaagt---cttggtgtccaacacgagcgtgtatacactcaattcaatcactctcactttctgaaat |
39245642 |
T |
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