View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19022_low_9 (Length: 263)

Name: NF19022_low_9
Description: NF19022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19022_low_9
NF19022_low_9
[»] chr5 (29 HSPs)
chr5 (23-255)||(30293267-30293499)
chr5 (137-238)||(17555948-17556050)
chr5 (123-237)||(39030554-39030668)
chr5 (138-236)||(14646368-14646466)
chr5 (164-236)||(2884060-2884132)
chr5 (136-236)||(15119301-15119401)
chr5 (138-237)||(9956503-9956602)
chr5 (138-236)||(42324886-42324984)
chr5 (126-214)||(20219491-20219578)
chr5 (138-240)||(968284-968386)
chr5 (137-206)||(6021979-6022047)
chr5 (149-190)||(14325891-14325932)
chr5 (164-236)||(36058791-36058863)
chr5 (138-237)||(33669932-33670031)
chr5 (163-237)||(17234538-17234611)
chr5 (137-199)||(26730097-26730159)
chr5 (138-200)||(38958067-38958129)
chr5 (138-190)||(19644450-19644502)
chr5 (157-217)||(28023948-28024008)
chr5 (138-236)||(9530925-9531017)
chr5 (136-238)||(12619629-12619725)
chr5 (138-204)||(12619657-12619723)
chr5 (140-206)||(21019430-21019496)
chr5 (138-251)||(5727722-5727834)
chr5 (164-237)||(20185318-20185391)
chr5 (124-193)||(33498353-33498422)
chr5 (145-181)||(504183-504219)
chr5 (160-192)||(14973993-14974025)
chr5 (168-236)||(37040139-37040206)
[»] chr2 (30 HSPs)
chr2 (136-225)||(2884260-2884349)
chr2 (138-203)||(44726821-44726886)
chr2 (138-237)||(31469077-31469176)
chr2 (138-238)||(944777-944877)
chr2 (160-236)||(43398844-43398920)
chr2 (149-240)||(11386326-11386417)
chr2 (136-191)||(15660702-15660757)
chr2 (138-237)||(16180440-16180539)
chr2 (158-237)||(38935368-38935447)
chr2 (158-200)||(4592465-4592507)
chr2 (149-238)||(35693935-35694024)
chr2 (136-236)||(41912083-41912184)
chr2 (137-200)||(5713267-5713330)
chr2 (137-227)||(7932748-7932838)
chr2 (138-196)||(10459272-10459330)
chr2 (138-200)||(40823571-40823633)
chr2 (142-206)||(37804371-37804436)
chr2 (182-234)||(2775820-2775872)
chr2 (138-206)||(11386345-11386413)
chr2 (158-197)||(5388843-5388882)
chr2 (138-181)||(30517915-30517958)
chr2 (149-240)||(35311187-35311277)
chr2 (138-237)||(41374534-41374633)
chr2 (138-237)||(43042172-43042271)
chr2 (136-237)||(16564382-16564481)
chr2 (150-200)||(33615269-33615319)
chr2 (166-216)||(36597119-36597169)
chr2 (172-225)||(1862672-1862725)
chr2 (171-236)||(24037590-24037655)
chr2 (136-200)||(4224981-4225045)
[»] chr1 (17 HSPs)
chr1 (138-240)||(30693341-30693443)
chr1 (138-237)||(3693992-3694091)
chr1 (138-190)||(35310304-35310356)
chr1 (136-237)||(3739819-3739920)
chr1 (138-222)||(5056314-5056398)
chr1 (137-200)||(19758313-19758376)
chr1 (158-203)||(10498365-10498410)
chr1 (136-213)||(24023953-24024030)
chr1 (136-192)||(25026363-25026419)
chr1 (158-193)||(6061509-6061544)
chr1 (136-183)||(21242154-21242201)
chr1 (137-200)||(47543604-47543667)
chr1 (136-178)||(29855122-29855164)
chr1 (145-190)||(9238256-9238301)
chr1 (137-178)||(44329991-44330032)
chr1 (138-238)||(15343228-15343327)
chr1 (142-206)||(52861711-52861775)
[»] chr4 (16 HSPs)
chr4 (132-237)||(4423149-4423254)
chr4 (137-214)||(24788641-24788718)
chr4 (137-214)||(24819542-24819619)
chr4 (139-240)||(54235224-54235325)
chr4 (127-237)||(12276815-12276925)
chr4 (145-214)||(4479604-4479673)
chr4 (167-225)||(5496868-5496926)
chr4 (138-179)||(40391262-40391303)
chr4 (129-205)||(1871494-1871570)
chr4 (136-199)||(36494419-36494482)
chr4 (143-236)||(5024659-5024752)
chr4 (136-181)||(7270258-7270303)
chr4 (136-193)||(30848641-30848698)
chr4 (138-191)||(33759429-33759481)
chr4 (138-178)||(23151594-23151634)
chr4 (140-200)||(54010025-54010085)
[»] chr6 (10 HSPs)
chr6 (136-236)||(1986208-1986308)
chr6 (136-236)||(35003763-35003863)
chr6 (138-200)||(8437816-8437878)
chr6 (138-252)||(8215211-8215329)
chr6 (136-206)||(13422136-13422206)
chr6 (120-252)||(33822275-33822408)
chr6 (139-200)||(9829898-9829959)
chr6 (136-200)||(7343284-7343347)
chr6 (140-233)||(26395264-26395357)
chr6 (138-178)||(8211847-8211887)
[»] chr7 (14 HSPs)
chr7 (136-238)||(30794445-30794547)
chr7 (129-255)||(14773467-14773594)
chr7 (129-255)||(15223919-15224046)
chr7 (138-229)||(3769766-3769857)
chr7 (138-200)||(6803313-6803375)
chr7 (160-238)||(36035274-36035352)
chr7 (136-236)||(23971191-23971290)
chr7 (142-237)||(16866406-16866501)
chr7 (181-236)||(27147603-27147658)
chr7 (138-225)||(47967919-47968006)
chr7 (138-236)||(30794447-30794545)
chr7 (140-224)||(4259324-4259408)
chr7 (136-181)||(27147601-27147646)
chr7 (158-238)||(32652410-32652490)
[»] chr3 (13 HSPs)
chr3 (136-206)||(31280159-31280229)
chr3 (166-238)||(11256559-11256631)
chr3 (138-237)||(47783084-47783183)
chr3 (138-236)||(29637439-29637537)
chr3 (140-240)||(40955786-40955886)
chr3 (160-199)||(46733045-46733084)
chr3 (145-238)||(3956171-3956264)
chr3 (163-200)||(26439347-26439384)
chr3 (128-181)||(46829103-46829156)
chr3 (127-190)||(26914501-26914564)
chr3 (163-237)||(15282644-15282718)
chr3 (138-236)||(26104224-26104322)
chr3 (140-238)||(30806939-30807037)
[»] scaffold0067 (1 HSPs)
scaffold0067 (137-225)||(35945-36033)
[»] scaffold0027 (1 HSPs)
scaffold0027 (138-236)||(13180-13278)
[»] chr8 (11 HSPs)
chr8 (136-178)||(44080739-44080781)
chr8 (136-225)||(33557793-33557881)
chr8 (149-237)||(11114253-11114341)
chr8 (138-236)||(37627916-37628013)
chr8 (137-230)||(8777774-8777867)
chr8 (155-200)||(11196259-11196304)
chr8 (136-237)||(35901040-35901141)
chr8 (137-225)||(9548066-9548154)
chr8 (149-217)||(13209981-13210049)
chr8 (144-192)||(15114629-15114677)
chr8 (158-186)||(5799616-5799644)
[»] scaffold0126 (1 HSPs)
scaffold0126 (138-236)||(28173-28268)
[»] scaffold0097 (1 HSPs)
scaffold0097 (158-225)||(37937-38004)
[»] scaffold0072 (1 HSPs)
scaffold0072 (137-236)||(20368-20467)


Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 23 - 255
Target Start/End: Original strand, 30293267 - 30293499
Alignment:
Q  23 gtagttaacttttttaaccttgaggtatgtcctagcttggtaaattatttgttggaatcatgaaccatggagtggaaggatgtttatgcacatttagaat 122  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  30293267 gtagttaacttttttaaccttgaggtctgtcctaacttggtaaattatttgttggaatcatgaaccatggggtggaagcatgtttatgcacatttagaat 30293366  T
Q  123 gtactccttcgtactaaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatt 222  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||| ||||||||| || ||||||| ||||||||||    
T  30293367 gtactccttcgtactaaaatataagtaaaatttgatcaacaaaagtcaatgtatttgattcaaaatttatatcaaatacatcaacatatgttgactcatt 30293466  T
Q  223 tttacttatattttgaaataaatggagtattat 255  Q
    ||||||||||||||||||| |||||||||||||    
T  30293467 tttacttatattttgaaatgaatggagtattat 30293499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 137 - 238
Target Start/End: Complemental strand, 17556050 - 17555948
Alignment:
Q  137 taaaatataagtaaaatttgatcaacaaaaa-ttaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatattt 235  Q
    |||||||||||||||| ||| | |||||||| ||||||||| || || ||||||| |||||||||||| ||| ||  |||||||||||||||||||||||    
T  17556050 taaaatataagtaaaaattggtgaacaaaaagttaatgtatgtggttcaaaatttatatcaaatatatcaacttacgttgactcatttttacttatattt 17555951  T
Q  236 tga 238  Q
    |||    
T  17555950 tga 17555948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 123 - 237
Target Start/End: Original strand, 39030554 - 39030668
Alignment:
Q  123 gtactccttcgtactaaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatt 222  Q
    ||||| || ||| |||||||||||| |||| ||| ||||||||| |||||||||||| || |||||||||| |||||| |||||| | | |||||| |||    
T  39030554 gtactactccgttctaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaacttttgttgactaatt 39030653  T
Q  223 tttacttatattttg 237  Q
    ||| |||||||||||    
T  39030654 tttgcttatattttg 39030668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 138 - 236
Target Start/End: Complemental strand, 14646466 - 14646368
Alignment:
Q  138 aaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatatttt 236  Q
    ||||||||||  ||| ||||| || |||||||||||||| ||||| ||||||||||  ||||| |||||  |||||||||| |||||||||||||||||    
T  14646466 aaaatataagcgaaaattgataaataaaaattaatgtatatgattcaaaatttgtactaaatacattaatttatattgacttatttttacttatatttt 14646368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 164 - 236
Target Start/End: Original strand, 2884060 - 2884132
Alignment:
Q  164 aaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatatttt 236  Q
    ||||||||||||||||||||||||||||||| ||||| |||||  | |||||||  |||||||||||||||||    
T  2884060 aaaattaatgtatttgatttaaaatttgtattaaatacattaaattttattgaccaatttttacttatatttt 2884132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 236
Target Start/End: Original strand, 15119301 - 15119401
Alignment:
Q  136 ctaaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatattt 235  Q
    |||||||||||| |||| ||  |||| |||| ||||||||||||||| ||||||||||| |||||||||||| |||||| ||  ||||||  ||||||||    
T  15119301 ctaaaatataagcaaaaattagtcaataaaacttaatgtatttgattcaaaatttgtattaaatatattaacttatattaaccaatttttgtttatattt 15119400  T
Q  236 t 236  Q
    |    
T  15119401 t 15119401  T

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Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 138 - 237
Target Start/End: Complemental strand, 9956602 - 9956503
Alignment:
Q  138 aaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatattttg 237  Q
    ||||| ||||||||| ||| | ||||||| ||||||||||||||| ||||||| || || ||| || ||||||| ||||| |||||||||||| ||||||    
T  9956602 aaaatgtaagtaaaaattggttaacaaaagttaatgtatttgattcaaaatttataacagatacatcaacatatgttgacccatttttacttacattttg 9956503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 236
Target Start/End: Complemental strand, 42324984 - 42324886
Alignment:
Q  138 aaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatatttt 236  Q
    ||||||||||||||| ||| ||||||||| |||||||||||| |||||||||| || |||||| || ||  |||||||||  ||||| | |||||||||    
T  42324984 aaaatataagtaaaaattggtcaacaaaagttaatgtatttgttttaaaatttataccaaatacatcaatttatattgaccaattttaatttatatttt 42324886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 214
Target Start/End: Original strand, 20219491 - 20219578
Alignment:
Q  126 ctccttcgtactaaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatatt 214  Q
    ||||||||| ||||||| ||||||||||| ||||||||||| ||||| ||||||||| ||||||| |  ||||||||| ||| ||||||    
T  20219491 ctccttcgtcctaaaatgtaagtaaaatt-gatcaacaaaagttaatatatttgattcaaaatttatgccaaatatatcaacttatatt 20219578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 240
Target Start/End: Complemental strand, 968386 - 968284
Alignment:
Q  138 aaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatattttg 237  Q
    ||||||||||||||| |   ||||||||||||||| |||||  || |||||||||| |||||| || ||| || |||||| || ||||||||| ||||||    
T  968386 aaaatataagtaaaaatgagtcaacaaaaattaatatatttagttcaaaatttgtaccaaatacatcaacttaaattgacccacttttacttacattttg 968287  T
Q  238 aaa 240  Q
    |||    
T  968286 aaa 968284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 206
Target Start/End: Complemental strand, 6022047 - 6021979
Alignment:
Q  137 taaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaa 206  Q
    |||||||||| ||||||| ||||| ||||| ||||||||||| ||||||||||| ||||||||| |||||    
T  6022047 taaaatataaataaaatt-gatcagcaaaagttaatgtatttaatttaaaatttatatcaaatacattaa 6021979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 190
Target Start/End: Original strand, 14325891 - 14325932
Alignment:
Q  149 aaaatttgatcaacaaaaattaatgtatttgatttaaaattt 190  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  14325891 aaaatttgatcaacaaaaattaatgtatttgattcaaaattt 14325932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 236
Target Start/End: Original strand, 36058791 - 36058863
Alignment:
Q  164 aaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatatttt 236  Q
    ||||||||||||| ||||||||||||||||| |||||||| ||  ||||||||  | ||||| ||||||||||    
T  36058791 aaaattaatgtatatgatttaaaatttgtataaaatatatcaatttatattgatccgtttttgcttatatttt 36058863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 237
Target Start/End: Complemental strand, 33670031 - 33669932
Alignment:
Q  138 aaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatattttg 237  Q
    ||||| |||| |||| ||| |||| |||| |||||||||||| ||||||||||||| || ||| | |||| ||| ||||| ||||||| |||| ||||||    
T  33670031 aaaatgtaagcaaaaattggtcaaaaaaagttaatgtatttggtttaaaatttgtaccagatacactaacttatgttgacccatttttgcttacattttg 33669932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 163 - 237
Target Start/End: Complemental strand, 17234611 - 17234538
Alignment:
Q  163 aaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatattttg 237  Q
    |||||||||| |||||  ||||||||||||| |||||| |||||  |||||| |||||||||| |||||||||||    
T  17234611 aaaaattaatatattttgtttaaaatttgtagcaaatacattaatttatatt-actcatttttgcttatattttg 17234538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 199
Target Start/End: Complemental strand, 26730159 - 26730097
Alignment:
Q  137 taaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaat 199  Q
    |||||||||  ||||| ||| | ||||||| ||||||||||||||| ||||||||||||||||    
T  26730159 taaaatatagataaaaattggttaacaaaagttaatgtatttgattaaaaatttgtatcaaat 26730097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 38958067 - 38958129
Alignment:
Q  138 aaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaata 200  Q
    ||||||||||||||| ||||| ||||||| |||||||||||| || ||| |||||| ||||||    
T  38958067 aaaatataagtaaaaattgattaacaaaagttaatgtatttggttcaaattttgtaccaaata 38958129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 19644502 - 19644450
Alignment:
Q  138 aaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaattt 190  Q
    ||||||||||||| | |||||||||||||||||| ||||||| || |||||||    
T  19644502 aaaatataagtaagaattgatcaacaaaaattaacgtatttggttcaaaattt 19644450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 28024008 - 28023948
Alignment:
Q  157 atcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgac 217  Q
    ||||| |||| ||||||||||||||| ||||||||||  ||||| |||||| |||||||||    
T  28024008 atcaataaaagttaatgtatttgattcaaaatttgtacaaaatacattaacttatattgac 28023948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 236
Target Start/End: Original strand, 9530925 - 9531017
Alignment:
Q  138 aaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatatttt 236  Q
    ||||||||||||||| ||||||||      |||||||||||| || ||||||| ||||||||| |  ||  ||||||||||||||||| |||| |||||    
T  9530925 aaaatataagtaaaaattgatcaa------ttaatgtatttggttcaaaatttatatcaaatacaccaatttatattgactcatttttgcttacatttt 9531017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 238
Target Start/End: Original strand, 12619629 - 12619725
Alignment:
Q  136 ctaaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatattt 235  Q
    |||||||||||| |||| |||||||||||| ||      |||||||| ||||||| ||||||||| || ||| ||| ||||  ||||||| |||||||||    
T  12619629 ctaaaatataagcaaaagttgatcaacaaatat------atttgattcaaaatttatatcaaatacatcaacttatgttgatccatttttgcttatattt 12619722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 204
Target Start/End: Complemental strand, 12619723 - 12619657
Alignment:
Q  138 aaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatatt 204  Q
    |||||||||| |||| | |||||||| || || ||||||||||| |||| |||| ||||||||||||    
T  12619723 aaaatataagcaaaaatggatcaacataagttgatgtatttgatataaattttgaatcaaatatatt 12619657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 206
Target Start/End: Original strand, 21019430 - 21019496
Alignment:
Q  140 aatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaa 206  Q
    |||||||||||||||| ||||| |||||||||||| ||| ||| |||| | |||| ||||| |||||    
T  21019430 aatataagtaaaatttaatcaataaaaattaatgtgtttaattcaaaactcgtataaaatacattaa 21019496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 251
Target Start/End: Original strand, 5727722 - 5727834
Alignment:
Q  138 aaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatattttg 237  Q
    ||||| ||||||||| ||| |||| |||||||||| |||| | ||||||||||||| || ||| || ||| |||  ||||  ||||||||||| ||||||    
T  5727722 aaaatgtaagtaaaaattggtcaataaaaattaatatattgg-tttaaaatttgtaccagatacatcaacttattgtgacctatttttacttacattttg 5727820  T
Q  238 aaataaatggagta 251  Q
    | | | ||||||||    
T  5727821 agacagatggagta 5727834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 237
Target Start/End: Complemental strand, 20185391 - 20185318
Alignment:
Q  164 aaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatattttg 237  Q
    |||||||||||||||| || ||||||||||  ||||| ||  || |||||| ||||||||||| ||| ||||||    
T  20185391 aaaattaatgtatttggttcaaaatttgtacaaaatacatcgacttatattaactcatttttatttacattttg 20185318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 193
Target Start/End: Original strand, 33498353 - 33498422
Alignment:
Q  124 tactccttcgtactaaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgta 193  Q
    ||||||| ||| |||||||||||| |||| |||  |||||||||| ||| |||||| || ||||||||||    
T  33498353 tactcctccgtcctaaaatataagcaaaagttggccaacaaaaatcaatatatttggttcaaaatttgta 33498422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 181
Target Start/End: Complemental strand, 504219 - 504183
Alignment:
Q  145 aagtaaaatttgatcaacaaaaattaatgtatttgat 181  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  504219 aagtaaaagttggtcaacaaaaattaatgtatttgat 504183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 192
Target Start/End: Original strand, 14973993 - 14974025
Alignment:
Q  160 aacaaaaattaatgtatttgatttaaaatttgt 192  Q
    ||||||||||||| |||||||||||||||||||    
T  14973993 aacaaaaattaatatatttgatttaaaatttgt 14974025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 37040139 - 37040206
Alignment:
Q  168 ttaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatatttt 236  Q
    |||||||||||||||||||||||||| |  ||| || ||| ||| || || ||||||||||||||||||    
T  37040139 ttaatgtatttgatttaaaatttgtacctcatacatcaacttatgtt-acccatttttacttatatttt 37040206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 136 - 225
Target Start/End: Original strand, 2884260 - 2884349
Alignment:
Q  136 ctaaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcattttt 225  Q
    ||||||||||||||||| ||  |||||||||||||||||||||| || ||||||| |||||||||||||||  |||||||||||||||||    
T  2884260 ctaaaatataagtaaaaatttgtcaacaaaaattaatgtatttggttcaaaatttatatcaaatatattaaattatattgactcattttt 2884349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 44726886 - 44726821
Alignment:
Q  138 aaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatat 203  Q
    |||||||||| |||| |||||||||||||||||||||||||  |||||||||| ||||||||||||    
T  44726886 aaaatataagaaaaaattgatcaacaaaaattaatgtatttagtttaaaatttatatcaaatatat 44726821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 138 - 237
Target Start/End: Original strand, 31469077 - 31469176
Alignment:
Q  138 aaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatattttg 237  Q
    |||||||||| |||| ||| ||||||||| |||||||||||| || ||||||||||||||||| |||||| |   |||||  |||||| |||||||||||    
T  31469077 aaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtatcaaatacattaactttcgttgaccaatttttgcttatattttg 31469176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 238
Target Start/End: Original strand, 944777 - 944877
Alignment:
Q  138 aaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatattttg 237  Q
    |||||||||| |||| | |||||| |||| |||||||||||  || |||||||||| |||||| || ||| ||| |||||| ||||||||||| ||||||    
T  944777 aaaatataagcaaaaatcgatcaataaaagttaatgtatttagttcaaaatttgtaccaaatacatcaacttatgttgactaatttttacttacattttg 944876  T
Q  238 a 238  Q
    |    
T  944877 a 944877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 236
Target Start/End: Complemental strand, 43398920 - 43398844
Alignment:
Q  160 aacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatatttt 236  Q
    ||||||| |||||||||||| || |||||||||| |||||| || ||| ||||||||| |||||||||||| |||||    
T  43398920 aacaaaagttaatgtatttggttcaaaatttgtaccaaatacatcaacttatattgacccatttttacttacatttt 43398844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 240
Target Start/End: Original strand, 11386326 - 11386417
Alignment:
Q  149 aaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatattttgaaa 240  Q
    |||| ||||||||||||||||||| ||||| ||| ||||||||||||||||| || ||| ||| ||||   | |||| ||||||||||||||    
T  11386326 aaaaattgatcaacaaaaattaatatatttaattcaaaatttgtatcaaatacatcaacttatgttgatcaaattttgcttatattttgaaa 11386417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 15660757 - 15660702
Alignment:
Q  136 ctaaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttg 191  Q
    |||||||||||| |||| |||||||||| |||||||||||||||||| ||||||||    
T  15660757 ctaaaatataagcaaaaattgatcaacacaaattaatgtatttgattcaaaatttg 15660702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 237
Target Start/End: Complemental strand, 16180539 - 16180440
Alignment:
Q  138 aaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatattttg 237  Q
    ||||||||||||||||||| ||||||||| |||||||||||| || ||||||| |||  |||| || ||  ||| |||||| |||||| |||| ||||||    
T  16180539 aaaatataagtaaaatttggtcaacaaaagttaatgtatttggttcaaaatttatatttaatacatcaatttatgttgactaatttttgcttacattttg 16180440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 158 - 237
Target Start/End: Complemental strand, 38935447 - 38935368
Alignment:
Q  158 tcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatattttg 237  Q
    ||||||||| |||||||||||  || ||||| ||||||||||| || ||| ||| ||||||||||||| |||||||||||    
T  38935447 tcaacaaaagttaatgtattttgttcaaaatctgtatcaaatacatcaacttatgttgactcatttttgcttatattttg 38935368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 200
Target Start/End: Original strand, 4592465 - 4592507
Alignment:
Q  158 tcaacaaaaattaatgtatttgatttaaaatttgtatcaaata 200  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  4592465 tcaacaaaaattaatgtatttgattttaaatttgtatcaaata 4592507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 238
Target Start/End: Original strand, 35693935 - 35694024
Alignment:
Q  149 aaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatattttga 238  Q
    |||| ||| |||| ||||||||||||||||| ||||||||| |||||||||| |||||  |||  ||| |||||||  ||||||||||||    
T  35693935 aaaaattggtcaataaaaattaatgtatttggtttaaaattagtatcaaatacattaatctatgatgattcattttcgcttatattttga 35694024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 236
Target Start/End: Complemental strand, 41912184 - 41912083
Alignment:
Q  136 ctaaaatataagtaaaat-ttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatatt 234  Q
    |||||||||||| ||||  ||| ||||||||||||||||||| || || |||||||||| ||  || |||||| ||| |||||| |||||||||| ||||    
T  41912184 ctaaaatataagcaaaaaattgttcaacaaaaattaatgtatctggttcaaaatttgtaccagctagattaacttatgttgacttatttttacttgtatt 41912085  T
Q  235 tt 236  Q
    ||    
T  41912084 tt 41912083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 200
Target Start/End: Complemental strand, 5713330 - 5713267
Alignment:
Q  137 taaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaata 200  Q
    |||||||||| ||||||||| ||||| |||||||| |||||| ||| ||||||||||| |||||    
T  5713330 taaaatataaataaaatttggtcaaccaaaattaacgtatttaattcaaaatttgtattaaata 5713267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 227
Target Start/End: Original strand, 7932748 - 7932838
Alignment:
Q  137 taaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttac 227  Q
    ||||||||||| |||| ||  ||||||||| |||| ||||||| || ||||||| ||||| ||| || ||| ||| |||||||||||||||    
T  7932748 taaaatataagcaaaaattagtcaacaaaagttaacgtatttggttcaaaatttatatcagatacatcaacttatgttgactcatttttac 7932838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 196
Target Start/End: Original strand, 10459272 - 10459330
Alignment:
Q  138 aaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatca 196  Q
    |||||||||| |||| ||| ||||||||| |||||||||||| || |||||||||||||    
T  10459272 aaaatataagcaaaaattggtcaacaaaagttaatgtatttggttcaaaatttgtatca 10459330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 40823633 - 40823571
Alignment:
Q  138 aaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaata 200  Q
    ||||||||||||||| |||||||| | | ||| ||||||||| |||||||||| |||||||||    
T  40823633 aaaatataagtaaaaattgatcaagagacatttatgtatttggtttaaaatttatatcaaata 40823571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 37804436 - 37804371
Alignment:
Q  142 tataagtaaaatttg-atcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaa 206  Q
    |||||| |||||||| |||||||||||||||||||| ||||| |||| ||| |||| |||||||||    
T  37804436 tataagaaaaatttggatcaacaaaaattaatgtatctgattaaaaaattgaatcagatatattaa 37804371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 2775820 - 2775872
Alignment:
Q  182 ttaaaatttgtatcaaatatattaacatatattgactcatttttacttatatt 234  Q
    ||||||||||||||| |||||| ||| |||||| ||||||||||| |||||||    
T  2775820 ttaaaatttgtatcagatatatcaacttatattaactcatttttatttatatt 2775872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 11386413 - 11386345
Alignment:
Q  138 aaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaa 206  Q
    |||||||||| ||||||||||||||| || || |||||||||||  ||| |||| || |||||||||||    
T  11386413 aaaatataagcaaaatttgatcaacataagttgatgtatttgatacaaattttgaattaaatatattaa 11386345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 197
Target Start/End: Original strand, 5388843 - 5388882
Alignment:
Q  158 tcaacaaaaattaatgtatttgatttaaaatttgtatcaa 197  Q
    ||||||||||||||||||||||||| |||||||| |||||    
T  5388843 tcaacaaaaattaatgtatttgattcaaaatttggatcaa 5388882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 181
Target Start/End: Complemental strand, 30517958 - 30517915
Alignment:
Q  138 aaaatataagtaaaatttgatcaacaaaaattaatgtatttgat 181  Q
    ||||||||||||||| ||  ||||||||||||||||||||||||    
T  30517958 aaaatataagtaaaaatttgtcaacaaaaattaatgtatttgat 30517915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 240
Target Start/End: Complemental strand, 35311277 - 35311187
Alignment:
Q  149 aaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatattttgaaa 240  Q
    |||||||  ||||||||| |||||||||||| || ||||||||||  | ||||| |||| ||| ||||| ||||||| |||| |||||||||    
T  35311277 aaaatttagtcaacaaaagttaatgtatttggttcaaaatttgtacaagatata-taacttatgttgacccatttttgcttacattttgaaa 35311187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 237
Target Start/End: Complemental strand, 41374633 - 41374534
Alignment:
Q  138 aaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatattttg 237  Q
    ||||||||||||||| ||  ||||| ||| ||||||||||||||| ||| ||| || |||||| || ||| | | || |||||||||| |||| ||||||    
T  41374633 aaaatataagtaaaaattagtcaacgaaagttaatgtatttgattcaaagtttataccaaatacatcaacttgtgttcactcatttttgcttacattttg 41374534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 237
Target Start/End: Original strand, 43042172 - 43042271
Alignment:
Q  138 aaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatattttg 237  Q
    ||||| ||||||||| | ||||||||||| |||||||||| | || ||||||| ||||| ||| || ||| | | || |||||||||| |||| ||||||    
T  43042172 aaaatgtaagtaaaaatcgatcaacaaaatttaatgtattcggttcaaaatttatatcagatacatcaacttttgtttactcatttttgcttacattttg 43042271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 237
Target Start/End: Original strand, 16564382 - 16564481
Alignment:
Q  136 ctaaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatattt 235  Q
    |||||||||||| |||| ||| || |||||  ||| |||  ||| || |||||||||| |||||| || ||| ||| |||||||||||||||||| ||||    
T  16564382 ctaaaatataagcaaaaattggtctacaaacgttagtgt--ttggttcaaaatttgtaccaaatacatcaacttatgttgactcatttttacttacattt 16564479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 200
Target Start/End: Original strand, 33615269 - 33615319
Alignment:
Q  150 aaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaata 200  Q
    ||||||| |||| ||| |||||| ||||||||| |||||||||||||||||    
T  33615269 aaatttggtcaataaatattaatatatttgattcaaaatttgtatcaaata 33615319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 36597119 - 36597169
Alignment:
Q  166 aattaatgtatttgatttaaaatttgtatcaaatatattaacatatattga 216  Q
    |||||||||||||||||||||||||||| || ||| || || |||||||||    
T  36597119 aattaatgtatttgatttaaaatttgtaacagatacatcaatatatattga 36597169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 1862725 - 1862672
Alignment:
Q  172 tgtatttgatttaaaatttgtatcaaatatattaacatatattgactcattttt 225  Q
    ||||||||||| ||||||||| ||||||| || ||| ||| |||||||||||||    
T  1862725 tgtatttgattcaaaatttgtgtcaaatacatcaacttatgttgactcattttt 1862672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 236
Target Start/End: Complemental strand, 24037655 - 24037590
Alignment:
Q  171 atgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatatttt 236  Q
    ||||||||  || |||||||||| ||||||||| ||| ||| ||||||||||||| |||| |||||    
T  24037655 atgtattttgttcaaaatttgtaccaaatatatcaacttatgttgactcatttttgcttacatttt 24037590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 4224981 - 4225045
Alignment:
Q  136 ctaaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaata 200  Q
    ||||||||||||||||| ||| |||||| ||||| |||||| || | |||| |||| ||||||||    
T  4224981 ctaaaatataagtaaaagttggtcaacataaattgatgtatctggtataaattttgaatcaaata 4225045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 138 - 240
Target Start/End: Original strand, 30693341 - 30693443
Alignment:
Q  138 aaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatattttg 237  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||| |||||| || |   ||| |||| ||||||||||||| ||||||    
T  30693341 aaaatataaataaaaattgatcaacaaaaattaatgtatttgattcaaaatttgtaccaaatacatcatattatgttgattcatttttacttacattttg 30693440  T
Q  238 aaa 240  Q
    |||    
T  30693441 aaa 30693443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 138 - 237
Target Start/End: Complemental strand, 3694091 - 3693992
Alignment:
Q  138 aaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatattttg 237  Q
    |||||||||||| || ||| ||||||||||||||||||||||||| ||||||||||| ||||| || ||  ||| ||||||||||| |||||| ||||||    
T  3694091 aaaatataagtagaaattggtcaacaaaaattaatgtatttgattcaaaatttgtattaaatacatcaatttatgttgactcatttctacttacattttg 3693992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 35310356 - 35310304
Alignment:
Q  138 aaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaattt 190  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  35310356 aaaatataagtaaaaattggtcaacaaaaattaatgtatttgatttaaaattt 35310304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 237
Target Start/End: Complemental strand, 3739920 - 3739819
Alignment:
Q  136 ctaaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatattt 235  Q
    |||||||||||| |||| ||| ||||||||| |||||||||||| || |||||||||| |||||| |||||| |   |||||  |||||| |||||||||    
T  3739920 ctaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaactttcgttgaccaatttttgcttatattt 3739821  T
Q  236 tg 237  Q
    ||    
T  3739820 tg 3739819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 5056398 - 5056314
Alignment:
Q  138 aaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatt 222  Q
    |||||||||  |||| ||| |||| ||||||||| |||||||||| ||||||||||||||||| || ||| ||| ||||||||||    
T  5056398 aaaatataaacaaaaattggtcaataaaaattaacgtatttgattcaaaatttgtatcaaatacatcaacttatgttgactcatt 5056314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 200
Target Start/End: Complemental strand, 19758376 - 19758313
Alignment:
Q  137 taaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaata 200  Q
    |||||||||||||||| ||| ||||||||| |||||||||||  |||| |||||||| ||||||    
T  19758376 taaaatataagtaaaaattggtcaacaaaagttaatgtatttagtttataatttgtaccaaata 19758313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 10498410 - 10498365
Alignment:
Q  158 tcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatat 203  Q
    ||||||||||||||| |||||  |||||||||||||||||||||||    
T  10498410 tcaacaaaaattaatatatttagtttaaaatttgtatcaaatatat 10498365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 213
Target Start/End: Complemental strand, 24024030 - 24023953
Alignment:
Q  136 ctaaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatat 213  Q
    |||||||||||  |||| ||||||||||||| ||||||||| || || |||||||| |||| ||| ||||||| ||||    
T  24024030 ctaaaatataacaaaaaattgatcaacaaaagttaatgtatgtggttcaaaatttgcatcagatacattaacaaatat 24023953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 25026419 - 25026363
Alignment:
Q  136 ctaaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgt 192  Q
    |||||||| |||||||||||  || |||||||||||||||| ||||| |||||||||    
T  25026419 ctaaaatacaagtaaaatttattctacaaaaattaatgtatctgattcaaaatttgt 25026363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 193
Target Start/End: Complemental strand, 6061544 - 6061509
Alignment:
Q  158 tcaacaaaaattaatgtatttgatttaaaatttgta 193  Q
    |||||||||||||||||||||| |||||||||||||    
T  6061544 tcaacaaaaattaatgtatttgttttaaaatttgta 6061509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 183
Target Start/End: Complemental strand, 21242201 - 21242154
Alignment:
Q  136 ctaaaatataagtaaaatttgatcaacaaaaattaatgtatttgattt 183  Q
    |||||||||||  |||| ||||||||||||||||||||||||| ||||    
T  21242201 ctaaaatataaaaaaaaattgatcaacaaaaattaatgtatttaattt 21242154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 47543604 - 47543667
Alignment:
Q  137 taaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaata 200  Q
    ||||||||||  |||| ||| |||||||||||||||| ||||| || |||||||||| ||||||    
T  47543604 taaaatataataaaaaattggtcaacaaaaattaatgaatttggttcaaaatttgtaccaaata 47543667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 178
Target Start/End: Complemental strand, 29855164 - 29855122
Alignment:
Q  136 ctaaaatataagtaaaatttgatcaacaaaaattaatgtattt 178  Q
    |||||||||||| |||| ||||||||||||| |||||||||||    
T  29855164 ctaaaatataagcaaaaattgatcaacaaaagttaatgtattt 29855122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 145 - 190
Target Start/End: Complemental strand, 9238301 - 9238256
Alignment:
Q  145 aagtaaaatttgatcaacaaaaattaatgtatttgatttaaaattt 190  Q
    ||||| || ||||||||||||||||||| ||||||||| |||||||    
T  9238301 aagtacaaattgatcaacaaaaattaatatatttgattcaaaattt 9238256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 178
Target Start/End: Original strand, 44329991 - 44330032
Alignment:
Q  137 taaaatataagtaaaatttgatcaacaaaaattaatgtattt 178  Q
    |||||||||||||||| |||||||||| ||||| ||||||||    
T  44329991 taaaatataagtaaaaattgatcaacataaattgatgtattt 44330032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 238
Target Start/End: Original strand, 15343228 - 15343327
Alignment:
Q  138 aaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatattttg 237  Q
    |||| |||| ||||| ||| ||||||||| | |||  |||||||| |||| |||||| ||||| || ||| ||| || ||||||||||||||| ||||||    
T  15343228 aaaacataaataaaaattggtcaacaaaagtcaataaatttgattaaaaaattgtattaaatacatcaacttatgtt-actcatttttacttaaattttg 15343326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 52861775 - 52861711
Alignment:
Q  142 tataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaa 206  Q
    ||||||||||| ||||||||  |||||| |||||||||||| ||| |||| |  |||||||||||    
T  52861775 tataagtaaaagttgatcaaataaaattgatgtatttgattcaaattttggactaaatatattaa 52861711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 237
Target Start/End: Original strand, 4423149 - 4423254
Alignment:
Q  132 cgtactaaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttat 231  Q
    ||||| ||||||||||| ||| |||||||| |||||||||| ||||||||| |||||||||| |||||| || ||| ||||||||  ||||||| ||||     
T  4423149 cgtaccaaaatataagtgaaaattgatcaataaaaattaatatatttgattcaaaatttgtaccaaatacatcaacttatattgatccatttttgcttac 4423248  T
Q  232 attttg 237  Q
    ||||||    
T  4423249 attttg 4423254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 137 - 214
Target Start/End: Original strand, 24788641 - 24788718
Alignment:
Q  137 taaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatatt 214  Q
    |||| ||||||||||| || |||||||||||||||||||||| |||| |||||||||||||||| || ||| ||||||    
T  24788641 taaattataagtaaaaattaatcaacaaaaattaatgtatttaatttgaaatttgtatcaaatacatcaacttatatt 24788718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 137 - 214
Target Start/End: Complemental strand, 24819619 - 24819542
Alignment:
Q  137 taaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatatt 214  Q
    |||| ||||||||||| || |||||||||||||||||||||| |||| |||||||||||||||| || ||| ||||||    
T  24819619 taaattataagtaaaaattaatcaacaaaaattaatgtatttaatttgaaatttgtatcaaatacatcaacttatatt 24819542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 139 - 240
Target Start/End: Complemental strand, 54235325 - 54235224
Alignment:
Q  139 aaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatattttga 238  Q
    ||||||||  |||| ||| ||||||||| |||||||||||| || ||||||||||  ||||| || ||  ||||||||||||||||| |||| |||||||    
T  54235325 aaatataaacaaaaattgctcaacaaaagttaatgtatttggttcaaaatttgtactaaatacatcaatttatattgactcatttttgcttacattttga 54235226  T
Q  239 aa 240  Q
    ||    
T  54235225 aa 54235224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 127 - 237
Target Start/End: Original strand, 12276815 - 12276925
Alignment:
Q  127 tccttcgtactaaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcattttta 226  Q
    |||| ||| ||||||||||||||||  ||| ||| ||||| ||||||||||||||| ||||||| ||  ||||| || ||| ||| |||||  ||||||     
T  12276815 tcctccgtcctaaaatataagtaaagattggtcagcaaaagttaatgtatttgattcaaaatttatactaaatacatcaacttatgttgacctatttttg 12276914  T
Q  227 cttatattttg 237  Q
    |||||||||||    
T  12276915 cttatattttg 12276925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 214
Target Start/End: Complemental strand, 4479673 - 4479604
Alignment:
Q  145 aagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatatt 214  Q
    |||||||| ||||||||||||||||||| ||||||||| ||||||| || || ||| |||||| ||||||    
T  4479673 aagtaaaaattgatcaacaaaaattaatatatttgattcaaaatttataccagatacattaacttatatt 4479604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 167 - 225
Target Start/End: Complemental strand, 5496926 - 5496868
Alignment:
Q  167 attaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcattttt 225  Q
    ||||||||||||| || |||||||||| |||||| || ||| |||||||||||||||||    
T  5496926 attaatgtatttggttcaaaatttgtaccaaataaatcaacttatattgactcattttt 5496868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 40391262 - 40391303
Alignment:
Q  138 aaaatataagtaaaatttgatcaacaaaaattaatgtatttg 179  Q
    ||||||||||||||| | ||||||||||||||||||||||||    
T  40391262 aaaatataagtaaaaatcgatcaacaaaaattaatgtatttg 40391303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 205
Target Start/End: Complemental strand, 1871570 - 1871494
Alignment:
Q  129 cttcgtactaaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatatta 205  Q
    |||||| ||||||||||| ||||| |   | || |||||||||||||||||||||||||||| ||||| ||| ||||    
T  1871570 cttcgtcctaaaatataaataaaaatcttttaataaaaattaatgtatttgatttaaaatttatatcagatacatta 1871494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 199
Target Start/End: Original strand, 36494419 - 36494482
Alignment:
Q  136 ctaaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaat 199  Q
    ||||||| ||||||||||||| |||| |||| ||||||||||||||| | ||||| ||| ||||    
T  36494419 ctaaaatgtaagtaaaatttggtcaagaaaagttaatgtatttgattcataatttatattaaat 36494482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 236
Target Start/End: Original strand, 5024659 - 5024752
Alignment:
Q  143 ataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatatttt 236  Q
    ||||| |||| ||||| || |||| |||||||||||  || ||||||| ||||||||| |  ||  |||||||||||||||||| ||| |||||    
T  5024659 ataagcaaaaattgataaataaaagttaatgtatttatttcaaaatttatatcaaatacaacaatttatattgactcatttttaattacatttt 5024752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 7270303 - 7270258
Alignment:
Q  136 ctaaaatataagtaaaatttgatcaacaaaaattaatgtatttgat 181  Q
    ||||||||||| ||||| || |||| ||||||||||||||||||||    
T  7270303 ctaaaatataattaaaaattaatcagcaaaaattaatgtatttgat 7270258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 193
Target Start/End: Complemental strand, 30848698 - 30848641
Alignment:
Q  136 ctaaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgta 193  Q
    ||||||| |||| |||| ||| |||||||||||||||||||||  || ||||||||||    
T  30848698 ctaaaatgtaagcaaaaattggtcaacaaaaattaatgtattttgttcaaaatttgta 30848641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 33759481 - 33759429
Alignment:
Q  138 aaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttg 191  Q
    ||||||||||||||||| | |||||||||||||||||||||  || ||||||||    
T  33759481 aaaatataagtaaaattgg-tcaacaaaaattaatgtatttagttcaaaatttg 33759429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 178
Target Start/End: Complemental strand, 23151634 - 23151594
Alignment:
Q  138 aaaatataagtaaaatttgatcaacaaaaattaatgtattt 178  Q
    |||||||||  |||| |||||||||||||||||||||||||    
T  23151634 aaaatataaagaaaaattgatcaacaaaaattaatgtattt 23151594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 200
Target Start/End: Complemental strand, 54010085 - 54010025
Alignment:
Q  140 aatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaata 200  Q
    |||||||| |||| || || ||||||| ||||||||||||||| ||||||| || ||||||    
T  54010085 aatataagcaaaaatttataaacaaaacttaatgtatttgattcaaaatttataccaaata 54010025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 136 - 236
Target Start/End: Original strand, 1986208 - 1986308
Alignment:
Q  136 ctaaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatattt 235  Q
    ||||||||||||||||| ||| |||| ||||||||||| ||||  |||||||||| || ||||||||||||| ||| |||||| ||||||| ||| ||||    
T  1986208 ctaaaatataagtaaaagttggtcaataaaaattaatgcatttagtttaaaatttataccaaatatattaacttatgttgactgatttttatttacattt 1986307  T
Q  236 t 236  Q
    |    
T  1986308 t 1986308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 136 - 236
Target Start/End: Original strand, 35003763 - 35003863
Alignment:
Q  136 ctaaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatattt 235  Q
    ||||||||||||||||| ||| | || |||||||||||||||||||| ||||||||||  |||||||| ||| ||| |||| |||||||| |||| ||||    
T  35003763 ctaaaatataagtaaaaattggttaataaaaattaatgtatttgattcaaaatttgtacaaaatatatcaacttatgttgattcatttttgcttacattt 35003862  T
Q  236 t 236  Q
    |    
T  35003863 t 35003863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 8437878 - 8437816
Alignment:
Q  138 aaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaata 200  Q
    ||||||||||||||||||  ||||||||||||||||||||||||| |||||||||| ||||||    
T  8437878 aaaatataagtaaaatttagtcaacaaaaattaatgtatttgattcaaaatttgtaccaaata 8437816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 138 - 252
Target Start/End: Original strand, 8215211 - 8215329
Alignment:
Q  138 aaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatat----taacatatattgactcatttttacttatat 233  Q
    ||||||| | ||||| ||||||||||||  |||||||||||| | | |||||||||||||||| ||    |||| ||||||||| ||||||| |||||||    
T  8215211 aaaatattaataaaaattgatcaacaaatgttaatgtatttggtctgaaatttgtatcaaatacattaactaacttatattgacccatttttccttatat 8215310  T
Q  234 tttgaaataaatggagtat 252  Q
    ||| ||||||| |||||||    
T  8215311 tttaaaataaagggagtat 8215329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 206
Target Start/End: Original strand, 13422136 - 13422206
Alignment:
Q  136 ctaaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaa 206  Q
    ||||||| ||||||||| ||| |||| |||||||||||||||||||||||||||| || || |||||||||    
T  13422136 ctaaaatgtaagtaaaaattgctcaataaaaattaatgtatttgatttaaaatttataccagatatattaa 13422206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 252
Target Start/End: Original strand, 33822275 - 33822408
Alignment:
Q  120 aatgtactccttc-gtactaaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgact 218  Q
    |||||||||| || || ||||||| ||| ||||| ||||| ||||||| ||||| |||||  || ||||||||||||||||| || ||| |||||| |      
T  33822275 aatgtactccatccgtcctaaaatgtaaataaaaattgattaacaaaagttaatatatttagttcaaaatttgtatcaaatacatcaacttatattaatc 33822374  T
Q  219 catttttacttatattttgaaataaatggagtat 252  Q
    |||||||||||| ||||||| |  ||||||||||    
T  33822375 catttttacttacattttgagacgaatggagtat 33822408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 9829898 - 9829959
Alignment:
Q  139 aaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaata 200  Q
    |||||||||||||| ||  |||||||||||||||||||||  ||||||||||||| ||||||    
T  9829898 aaatataagtaaaaattagtcaacaaaaattaatgtattttgtttaaaatttgtaccaaata 9829959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 7343347 - 7343284
Alignment:
Q  136 ctaaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaata 200  Q
    ||||||||||||||||| ||||||||||||| ||||| ||||| |||| ||| ||||| ||||||    
T  7343347 ctaaaatataagtaaaaattgatcaacaaaagttaatatattt-atttcaaaattgtaccaaata 7343284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 233
Target Start/End: Complemental strand, 26395357 - 26395264
Alignment:
Q  140 aatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatat 233  Q
    ||||||||||||||||  |||| |||||||||||| ||| ||| ||| || |||| ||||| |||||  ||| |||| | ||||||| ||||||    
T  26395357 aatataagtaaaatttagtcaataaaaattaatgtgtttaattcaaagttcgtataaaatacattaatttatgttgatttatttttatttatat 26395264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 178
Target Start/End: Complemental strand, 8211887 - 8211847
Alignment:
Q  138 aaaatataagtaaaatttgatcaacaaaaattaatgtattt 178  Q
    ||||||||||||||| | |||||||| ||||||||||||||    
T  8211887 aaaatataagtaaaaatagatcaacataaattaatgtattt 8211847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 136 - 238
Target Start/End: Original strand, 30794445 - 30794547
Alignment:
Q  136 ctaaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatattt 235  Q
    ||||||||||||||||||||| ||||||||| ||||| ||||||||| |||||||||| |||||| ||| |  ||| ||||  || ||||||||| ||||    
T  30794445 ctaaaatataagtaaaatttggtcaacaaaatttaatatatttgattcaaaatttgtaccaaatacattcatttatgttgatccaattttacttacattt 30794544  T
Q  236 tga 238  Q
    |||    
T  30794545 tga 30794547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 129 - 255
Target Start/End: Original strand, 14773467 - 14773594
Alignment:
Q  129 cttcgtactaaaatataagtaaaatttgatcaacaaaaa-ttaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttac 227  Q
    |||||| ||||||| ||||||||| ||| | |||||||| ||||||||| || || ||||||| ||||| ||| || ||| ||  |||||||||||||||    
T  14773467 cttcgtcctaaaatgtaagtaaaaattggtgaacaaaaagttaatgtatgtggttcaaaatttatatcagatacatcaacttacgttgactcatttttac 14773566  T
Q  228 ttatattttgaaataaatggagtattat 255  Q
    ||||||||||| |  ||||| |||||||    
T  14773567 ttatattttgagacgaatggggtattat 14773594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 129 - 255
Target Start/End: Original strand, 15223919 - 15224046
Alignment:
Q  129 cttcgtactaaaatataagtaaaatttgatcaacaaaaa-ttaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttac 227  Q
    |||||| ||||||| ||||||||| ||| | |||||||| ||||||||| || || ||||||| ||||| ||| || ||| ||  |||||||||||||||    
T  15223919 cttcgtcctaaaatgtaagtaaaaattggtgaacaaaaagttaatgtatgtggttcaaaatttatatcagatacatcaacttacgttgactcatttttac 15224018  T
Q  228 ttatattttgaaataaatggagtattat 255  Q
    ||||||||||| |  ||||| |||||||    
T  15224019 ttatattttgagacgaatggggtattat 15224046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 229
Target Start/End: Complemental strand, 3769857 - 3769766
Alignment:
Q  138 aaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttactt 229  Q
    ||||||||| ||||| |||||  |||||| |||||||||||  |||||||||||||| ||||| || ||| | | |||||||||||||||||    
T  3769857 aaaatataaataaaaattgatatacaaaagttaatgtatttagtttaaaatttgtattaaatacatcaacttgtgttgactcatttttactt 3769766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 6803313 - 6803375
Alignment:
Q  138 aaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaata 200  Q
    |||||||||| |||||||| ||||||||| |||||||||||  ||||||||||||| ||||||    
T  6803313 aaaatataagcaaaatttggtcaacaaaagttaatgtatttagtttaaaatttgtaccaaata 6803375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 238
Target Start/End: Original strand, 36035274 - 36035352
Alignment:
Q  160 aacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatattttga 238  Q
    |||||||||||| |||||||||||||||||| ||||||| | || ||| ||| || | | |||||||||||||||||||    
T  36035274 aacaaaaattaaggtatttgatttaaaatttatatcaaaaacatcaacttatgttaatttatttttacttatattttga 36035352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 236
Target Start/End: Complemental strand, 23971290 - 23971191
Alignment:
Q  136 ctaaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatattt 235  Q
    |||||||||||| |||||| | ||||||||||| ||| |||||  || |||||||||| |||||| || ||| |||||||| | |||||| |||||||||    
T  23971290 ctaaaatataagaaaaattgg-tcaacaaaaataaatatatttagttcaaaatttgtaccaaatacatcaacttatattgatttatttttgcttatattt 23971192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 237
Target Start/End: Complemental strand, 16866501 - 16866406
Alignment:
Q  142 tataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatattttg 237  Q
    |||||| |||| ||| ||||||||| |||||||||||| || |||||||||| | |||| |||||| | ||||||   |||||| |||||||||||    
T  16866501 tataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtacctaatacattaacttttattgatcaatttttgcttatattttg 16866406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 27147658 - 27147603
Alignment:
Q  181 tttaaaatttgtatcaaatatattaacatatattgactcatttttacttatatttt 236  Q
    |||||||||||||||||||| |||||| | | |||||| |||||||||||||||||    
T  27147658 tttaaaatttgtatcaaatacattaacttttgttgactaatttttacttatatttt 27147603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 225
Target Start/End: Original strand, 47967919 - 47968006
Alignment:
Q  138 aaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcattttt 225  Q
    |||||||||  |||||| | |||||||||||| ||||||||  |||||||||||||  ||||| |||||| ||| |||| ||||||||    
T  47967919 aaaatataaacaaaattcggtcaacaaaaatttatgtatttagtttaaaatttgtactaaatacattaacttatgttgattcattttt 47968006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 236
Target Start/End: Complemental strand, 30794545 - 30794447
Alignment:
Q  138 aaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatatttt 236  Q
    ||||| ||||||||||| |||||||| |||| |||||||||| |  ||| |||| ||||||||||||||  | | |||||  | |||||||||||||||    
T  30794545 aaaatgtaagtaaaattggatcaacataaatgaatgtatttggtacaaattttgaatcaaatatattaaattttgttgaccaaattttacttatatttt 30794447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 224
Target Start/End: Complemental strand, 4259408 - 4259324
Alignment:
Q  140 aatataagtaaaatttgatc-aacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttt 224  Q
    |||||||| |||| |||||| ||||||| |||||||||||| || ||||||| ||  ||||| |||||| ||| ||||||||||||    
T  4259408 aatataagcaaaaattgatctaacaaaagttaatgtatttg-ttcaaaatttatagtaaatacattaacttatgttgactcatttt 4259324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 27147601 - 27147646
Alignment:
Q  136 ctaaaatataagtaaaatttgatcaacaaaaattaatgtatttgat 181  Q
    ||||||||||||||||| ||  ||||||||| ||||||||||||||    
T  27147601 ctaaaatataagtaaaaattagtcaacaaaagttaatgtatttgat 27147646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 238
Target Start/End: Complemental strand, 32652490 - 32652410
Alignment:
Q  158 tcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatattttga 238  Q
    |||| ||||||||||||||||| || ||| |||||| |||||| |  ||  ||| |||||| ||||||||||| |||||||    
T  32652490 tcaataaaaattaatgtatttggttcaaagtttgtaccaaatacaccaatttatgttgacttatttttacttacattttga 32652410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 206
Target Start/End: Original strand, 31280159 - 31280229
Alignment:
Q  136 ctaaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaa 206  Q
    ||||||||||||||||| ||||||||||||| |||||||||||| || |||||||||| || ||| |||||    
T  31280159 ctaaaatataagtaaaaattgatcaacaaaatttaatgtatttggttcaaaatttgtaccatatacattaa 31280229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 11256559 - 11256631
Alignment:
Q  166 aattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatattttga 238  Q
    ||||||||||||||||  ||||||||||||||||| || ||||||| || | |||||||| ||||||||||||    
T  11256559 aattaatgtatttgatccaaaatttgtatcaaatacatcaacatatgttaattcatttttgcttatattttga 11256631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 237
Target Start/End: Original strand, 47783084 - 47783183
Alignment:
Q  138 aaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatattttg 237  Q
    ||||| ||||||||| ||| |||| |||| |||||||||||| || ||||||||||||| ||| ||   | ||| ||||||||||||| |||||||||||    
T  47783084 aaaatgtaagtaaaaattggtcaaaaaaagttaatgtatttggttcaaaatttgtatcagatacatcggcttatgttgactcatttttgcttatattttg 47783183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 236
Target Start/End: Complemental strand, 29637537 - 29637439
Alignment:
Q  138 aaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatatttt 236  Q
    |||||||||||| || ||  |||||| ||||||  ||||||| || |||||||||||||||||||||||  ||| |||||| |||||| |||| |||||    
T  29637537 aaaatataagtagaaattagtcaacataaattacagtatttggttcaaaatttgtatcaaatatattaatttatgttgacttattttttcttacatttt 29637439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 140 - 240
Target Start/End: Original strand, 40955786 - 40955886
Alignment:
Q  140 aatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatattttgaa 239  Q
    |||||||  |||| |||||||| |||||||| |||||||  || ||||||||||||| ||| |||||| ||| || || |||||| ||||| ||||||||    
T  40955786 aatataacaaaaaattgatcaataaaaattattgtatttagttcaaaatttgtatcatatacattaacttattttaacacattttaacttacattttgaa 40955885  T
Q  240 a 240  Q
    |    
T  40955886 a 40955886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 199
Target Start/End: Original strand, 46733045 - 46733084
Alignment:
Q  160 aacaaaaattaatgtatttgatttaaaatttgtatcaaat 199  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  46733045 aacaaaaattaatgtatttgattcaaaatttgtatcaaat 46733084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 238
Target Start/End: Original strand, 3956171 - 3956264
Alignment:
Q  145 aagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatattttga 238  Q
    |||||||| ||| ||||||||||| |||||||||  ||||||||||| |||||||||| |||  ||| ||||  ||||||   |||||||||||    
T  3956171 aagtaaaaattggtcaacaaaaataaatgtatttagtttaaaatttggatcaaatatagtaagttatgttgatccattttcgtttatattttga 3956264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 200
Target Start/End: Original strand, 26439347 - 26439384
Alignment:
Q  163 aaaaattaatgtatttgatttaaaatttgtatcaaata 200  Q
    |||||||||||||||||||| |||||||||||||||||    
T  26439347 aaaaattaatgtatttgattcaaaatttgtatcaaata 26439384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 46829156 - 46829103
Alignment:
Q  128 ccttcgtactaaaatataagtaaaatttgatcaacaaaaattaatgtatttgat 181  Q
    ||||||| |||||||||||| |||| ||| ||||||||| ||||||||||||||    
T  46829156 ccttcgtcctaaaatataagcaaaaattggtcaacaaaagttaatgtatttgat 46829103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 190
Target Start/End: Complemental strand, 26914564 - 26914501
Alignment:
Q  127 tccttcgtactaaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaattt 190  Q
    |||||||| | ||||| |||| |||| ||||||||||||||||||||||| || || |||||||    
T  26914564 tccttcgttccaaaatgtaagcaaaaattgatcaacaaaaattaatgtatgtggttcaaaattt 26914501  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 237
Target Start/End: Complemental strand, 15282718 - 15282644
Alignment:
Q  163 aaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatattttg 237  Q
    |||| ||||||||||||||||||||||||||||| ||  || ||| ||| ||||  |||||||  ||||||||||    
T  15282718 aaaagttaatgtatttgatttaaaatttgtatcagattcatcaacttatgttgatccatttttgtttatattttg 15282644  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 236
Target Start/End: Original strand, 26104224 - 26104322
Alignment:
Q  138 aaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatatttt 236  Q
    ||||| ||| ||||| ||| | |||||||| ||||||||||  || ||||||||||||||| | || ||  ||| ||||||||||||| |||| |||||    
T  26104224 aaaatgtaaataaaaattggttaacaaaaactaatgtatttagttcaaaatttgtatcaaacaaatcaatttatgttgactcatttttgcttacatttt 26104322  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 238
Target Start/End: Original strand, 30806939 - 30807037
Alignment:
Q  140 aatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatattttga 238  Q
    |||||||| |||| |||||||| ||||||||||||| ||| |  ||||||||||||  | | |  ||| ||| ||||| ||||||| ||||||||||||    
T  30806939 aatataagaaaaaattgatcaataaaaattaatgtacttggtccaaaatttgtatcgcacacaccaacttatgttgacccatttttgcttatattttga 30807037  T

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Target: scaffold0067 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 225
Target Start/End: Original strand, 35945 - 36033
Alignment:
Q  137 taaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcattttt 225  Q
    |||||||||| ||||| |||||||||||   |||||||||||| |  ||||||||||||||||| || ||  |||||||||||||||||    
T  35945 taaaatataaataaaaattgatcaacaaccgttaatgtatttggtacaaaatttgtatcaaatacatcaatttatattgactcattttt 36033  T

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Target: scaffold0027 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 236
Target Start/End: Original strand, 13180 - 13278
Alignment:
Q  138 aaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatatttt 236  Q
    ||||| |||| |||| | ||||||||||| |||||||||||| |||||||||||||  | ||| || ||| |||||| |||| |||||||||| |||||    
T  13180 aaaatgtaagcaaaaatggatcaacaaaagttaatgtatttggtttaaaatttgtacaagatacatcaacttatattaactcgtttttacttacatttt 13278  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 178
Target Start/End: Complemental strand, 44080781 - 44080739
Alignment:
Q  136 ctaaaatataagtaaaatttgatcaacaaaaattaatgtattt 178  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  44080781 ctaaaatataagtaaaaattgatcaacaaaaattaatgtattt 44080739  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 225
Target Start/End: Complemental strand, 33557881 - 33557793
Alignment:
Q  136 ctaaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcattttt 225  Q
    |||||| |||||||||| |||||||| |||| |||||||||||  || ||||||||||||||||| || ||| ||| |||| ||||||||    
T  33557881 ctaaaacataagtaaaaattgatcaataaaagttaatgtatttagttcaaaatttgtatcaaatacataaacttatgttga-tcattttt 33557793  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 237
Target Start/End: Original strand, 11114253 - 11114341
Alignment:
Q  149 aaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatattttg 237  Q
    |||| ||||||||||||||||||||||||   |||||||||| || |||||| || ||| ||| ||||   ||||||||||||||||||    
T  11114253 aaaagttgatcaacaaaaattaatgtattcagtttaaaatttataccaaatacatcaacttatgttgatcaatttttacttatattttg 11114341  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 236
Target Start/End: Complemental strand, 37628013 - 37627916
Alignment:
Q  138 aaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatatttt 236  Q
    |||||||||  |||| || || ||||||| ||||| | ||||||| ||||||||||||||||| || ||| |||||| ||| ||||||||||| |||||    
T  37628013 aaaatataaacaaaaatttattaacaaaagttaatat-tttgattcaaaatttgtatcaaatacatcaacttatattaacttatttttacttacatttt 37627916  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 230
Target Start/End: Original strand, 8777774 - 8777867
Alignment:
Q  137 taaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttactta 230  Q
    ||||||||||  |||| ||||||||||||| ||||| |||||| || ||||||| ||| ||||| |||||| ||| || |  ||||||||||||    
T  8777774 taaaatataaacaaaaattgatcaacaaaagttaatatatttggttcaaaatttatattaaatacattaacttatgttaatccatttttactta 8777867  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 11196304 - 11196259
Alignment:
Q  155 tgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaata 200  Q
    |||||||||||||||||||||||| ||| ||||||||||| |||||    
T  11196304 tgatcaacaaaaattaatgtatttaattcaaaatttgtattaaata 11196259  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 237
Target Start/End: Complemental strand, 35901141 - 35901040
Alignment:
Q  136 ctaaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatattt 235  Q
    |||||||||||| |||| | | ||||||||| |||||||||| |  | ||||||||||  || || || ||| ||| ||||||||||||| |||||||||    
T  35901141 ctaaaatataagcaaaaataggtcaacaaaagttaatgtattgggctcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattt 35901042  T
Q  236 tg 237  Q
    ||    
T  35901041 tg 35901040  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 225
Target Start/End: Complemental strand, 9548154 - 9548066
Alignment:
Q  137 taaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcattttt 225  Q
    ||||||||||  |||| ||| ||||||||||||| | |||||| || ||||||||||  ||||| || ||| ||| |||||||||||||    
T  9548154 taaaatataaacaaaaattgttcaacaaaaattattatatttggttcaaaatttgtactaaatacatcaacttatgttgactcattttt 9548066  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 217
Target Start/End: Original strand, 13209981 - 13210049
Alignment:
Q  149 aaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgac 217  Q
    |||| ||||||||||||| |||||||||||| || ||||||||||||| ||| || ||| ||| |||||    
T  13209981 aaaaattgatcaacaaaagttaatgtatttggttcaaaatttgtatcagatacatcaacttatgttgac 13210049  T

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Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 192
Target Start/End: Original strand, 15114629 - 15114677
Alignment:
Q  144 taagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgt 192  Q
    |||| |||| ||| ||||||||||||||||||||||||| |||||||||    
T  15114629 taagaaaaaattggtcaacaaaaattaatgtatttgattcaaaatttgt 15114677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 186
Target Start/End: Complemental strand, 5799644 - 5799616
Alignment:
Q  158 tcaacaaaaattaatgtatttgatttaaa 186  Q
    |||||||||||||||||||||||||||||    
T  5799644 tcaacaaaaattaatgtatttgatttaaa 5799616  T

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Target: scaffold0126 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 236
Target Start/End: Original strand, 28173 - 28268
Alignment:
Q  138 aaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatatttt 236  Q
    ||||||||| ||||| ||||| ||||||| |||||||||||| || |||||| ||| |||||   | ||| | ||||||||||||||| ||| ||||||    
T  28173 aaaatataaataaaaattgattaacaaaagttaatgtatttggttcaaaattcgtaccaaat---tcaacctgtattgactcatttttgcttgtatttt 28268  T

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Target: scaffold0097 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 225
Target Start/End: Original strand, 37937 - 38004
Alignment:
Q  158 tcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcattttt 225  Q
    ||||||||| |||||||||||| |||||||||| || |||||| || ||  ||||||||||| |||||    
T  37937 tcaacaaaagttaatgtatttggtttaaaatttataccaaatacatcaatttatattgactcgttttt 38004  T

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Target: scaffold0072 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 236
Target Start/End: Complemental strand, 20467 - 20368
Alignment:
Q  137 taaaatataagtaaaatttgatcaacaaaaattaatgtatttgatttaaaatttgtatcaaatatattaacatatattgactcatttttacttatatttt 236  Q
    |||||| |||| |||| ||| |||  ||||||||| |||| || |||||||||||||| ||||| |||||  ||| |||||  ||||||||||| |||||    
T  20467 taaaatgtaagcaaaaattggtcagtaaaaattaacgtatgtggtttaaaatttgtattaaatacattaatttatgttgacatatttttacttacatttt 20368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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