View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19023_high_11 (Length: 269)
Name: NF19023_high_11
Description: NF19023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19023_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 86 - 250
Target Start/End: Original strand, 7668032 - 7668196
Alignment:
| Q |
86 |
caagaaaatatatgcttgaggaaattaaaaaacttcattacacattaaacattaatcctaaacagctagcattacacacacttgggactgcagggtgaaa |
185 |
Q |
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| T |
7668032 |
caagaaaatatatgcttgaggaaattaaaagacttcattacacattaaacattaatcctaaacagctagcattacacacacttgggactgcagggtgaaa |
7668131 |
T |
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| Q |
186 |
aatgagagttattttgtgcgccattttcttaaggaaatacatacattttgatataaagtagccct |
250 |
Q |
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| T |
7668132 |
aatgagagttattttgtgcgccattttcttaaggaaatacgtacattttgatataaagtagccct |
7668196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 86 - 239
Target Start/End: Original strand, 7088277 - 7088430
Alignment:
| Q |
86 |
caagaaaatatatgcttgaggaaattaaaaaacttcattacacattaaacattaatcctaaacagctagcattacacacacttgggactgcagggtgaaa |
185 |
Q |
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|||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||| |
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| T |
7088277 |
caagaaaatatatgcttgaggaaattaacaaacttcattgcacattaaacattaatcctaaacatctagcattacacaaacttgggcctgcagggtgaaa |
7088376 |
T |
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| Q |
186 |
aatgagagttattttgtgcgccattttcttaaggaaatacatacattttgatat |
239 |
Q |
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| T |
7088377 |
aatgacagttattttgtgcaccattttcttaaggaaatatgtacattttgatat |
7088430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 7668237 - 7668282
Alignment:
| Q |
131 |
taaacattaatcctaaacagctagcattacacacacttgggactgc |
176 |
Q |
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| T |
7668237 |
taaacattaatcctaaacagctagcattacacacacttgggactgc |
7668282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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