View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19023_high_8 (Length: 348)
Name: NF19023_high_8
Description: NF19023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19023_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 9 - 332
Target Start/End: Complemental strand, 34831084 - 34830761
Alignment:
| Q |
9 |
gaagaatatcaactaggtcaagaaaacaaaacactatgaaacttatagcttcattcacaaatcttccactcattgttaaaacggatctactttttcccat |
108 |
Q |
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| T |
34831084 |
gaagaaaatcaactaggtcaagaaaacaaaacactatgaaacttatagcttcattcacaaatcttccactcattgttaaaacggatctactttttcccat |
34830985 |
T |
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| Q |
109 |
tacaccactactcatttcttgtatattttctttgcttttgcatgcaaagtaaatcatacaaacaattttttaatgatgatgataatgatagtgtaaaaat |
208 |
Q |
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| T |
34830984 |
tacaccactactcatttcttgtatattttctttgcttttgcatgcaaagaaaatcatacaaacaattttttaatgatgatgataatgatagtgtaaaaat |
34830885 |
T |
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| Q |
209 |
gttaaataaatagggttttgaatatagaaatcatcaacaatgttactaaaatatgcaaaaatgtaaaggaacaagaaaataaggatgtttggagaaaact |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34830884 |
gttaaataaatagggttttgaatatagaaatcatcaacaatgttactaaaatatgcaaaaatgtaaaggaacaagaaaataaggatgtttggagaaaact |
34830785 |
T |
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| Q |
309 |
gtgtttaaaggttatagtagtaat |
332 |
Q |
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|||||||||||||||||||||||| |
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| T |
34830784 |
gtgtttaaaggttatagtagtaat |
34830761 |
T |
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