View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19023_high_9 (Length: 302)
Name: NF19023_high_9
Description: NF19023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19023_high_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 40087776 - 40087486
Alignment:
| Q |
1 |
tccttcgaaatacccacaggttcgtttatccaactccattttgatctagaagtttctgaagaactgatatcttcttttaaagattcagttacgaagtttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40087776 |
tccttcgaaatacccacaggttcgtttatccaactccattttgatctagaagtttctgaagaactgatatcttcttttaaagattcagttacgaagtttg |
40087677 |
T |
|
| Q |
101 |
aaattgtagatgcagaattaatctggcatnnnnnnntt-atttttattacatcctacttactttggactaacaaataagagaaaacaccttggtatagat |
199 |
Q |
| |
|
||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40087676 |
aaattgtagatgcagaattaatctggcataaaaaaatttacttttattacatcctacttactttggactaacaaataagagaaaacaccttggtatagat |
40087577 |
T |
|
| Q |
200 |
agaatattcacaaaatgaatatgaattacacttttttagtaactctattcaattaaactatctattttgattgagataattgtgttattga |
290 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40087576 |
agaatattcacaaaatgaatatgaatcacacttttttagtaactctattcaattaaactatctattttgattgagataattgtgttattga |
40087486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 40061929 - 40061637
Alignment:
| Q |
1 |
tccttcgaaatacccacaggttcgtttatccaactccattttgatctagaagtttctgaagaactgatatcttcttttaaagattcagttacgaagtttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
40061929 |
tccttcgaaatacccacaggttcgtttatccaactccattttgaactagaagtttctaaagaactgatatcttcttttgaagatttagttacgaagtttg |
40061830 |
T |
|
| Q |
101 |
aaattgtagatgcagaattaatctggcatnnnnnnn---ttatttttattacatcctacttactttggactaacaaataagagaaaacaccttggtatag |
197 |
Q |
| |
|
|||||| |||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
40061829 |
aaattgcagatgcagaattaatctgccataataaacatgttatttttattacattctacttactttggactaataaataagagaaaacaccttggtatag |
40061730 |
T |
|
| Q |
198 |
atagaatattcacaaaatgaatatgaattacacttttttagtaactctattcaattaaactatctattttgattgagataattgtgttattga |
290 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
40061729 |
atagaatattcacaaaatgaatatggattacacttttttagtaactctattcaattaaactatctattttgattgaaataattgcgttattga |
40061637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 40080064 - 40079783
Alignment:
| Q |
1 |
tccttcgaaatacccacaggttcgtttatccaactccattttgatctagaagtttctgaagaactgatatcttcttttaaagattcagttacgaagtttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
40080064 |
tccttcgaaatacccacaggttcgtttatccaactccattttgaactagaagtttctaaagaactgatatcttc------------agttacgaagtttg |
40079977 |
T |
|
| Q |
101 |
aaattgtagatgcagaattaatctggcatnnnnnnnt--tatttttattacatcctacttactttggactaacaaataagagaaaacaccttgg-tatag |
197 |
Q |
| |
|
|||| | |||||||||||||||||| ||| | ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
40079976 |
aaatcgcagatgcagaattaatctgccataaaaaaatgatatttttattacatcctacttaccttggactaacaaataagagaaaacagcttggctatag |
40079877 |
T |
|
| Q |
198 |
atagaatattcacaaaatgaatatgaattacacttttttagtaactctattcaattaaactatctattttgattgagataattg-tgttattga |
290 |
Q |
| |
|
|||||||| ||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
40079876 |
atagaataatcacaaaatgaatattaatcacactttttttgtaactctattcaattaaactatctattttgattgcgataattgttgttattga |
40079783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University