View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19023_low_1 (Length: 681)
Name: NF19023_low_1
Description: NF19023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19023_low_1 |
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| [»] scaffold0050 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 132; Significance: 3e-68; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 22 - 245
Target Start/End: Complemental strand, 8087692 - 8087450
Alignment:
| Q |
22 |
tgaaataataaacaaattaagaaatgatatgttcaacaatagtagaaattgaatgatatacaatgtat-------------------gaaattagcaaca |
102 |
Q |
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| T |
8087692 |
tgaaataataaacaaattaagaaatgatatgttcaacaatagtagaaattgaatgatatataatgtataaattaaacaatgatgtatgaaattagtaaca |
8087593 |
T |
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| Q |
103 |
acgatacatacattctggattttattgatttctgaagnnnnnnnctcaaaaatgtaactatggacatgatatcaggtggtagtgaaaattgagaaccttg |
202 |
Q |
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| T |
8087592 |
acgatacatacattctggattttatttatttctgaagaaaaaaactcagaaatgtaactatggacatgatattaggtggttgtgaaaattgagaaccttg |
8087493 |
T |
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| Q |
203 |
agtaaatcaggaagcactctgagttggagcatcattgtcaatt |
245 |
Q |
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| T |
8087492 |
agtaaatcaggaagcactctgagttggagcatcattatcaatt |
8087450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 268 - 296
Target Start/End: Original strand, 8084626 - 8084654
Alignment:
| Q |
268 |
aaaagtgaatgagaaagattaaattggat |
296 |
Q |
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| T |
8084626 |
aaaagtgaatgagaaagattaaattggat |
8084654 |
T |
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Target: scaffold0050 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 617 - 675
Target Start/End: Original strand, 8131 - 8189
Alignment:
| Q |
617 |
gtacataactaatgacagccgatttagaaataaaaatttcttccactcattcatctcac |
675 |
Q |
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| T |
8131 |
gtacataactaatgacaaccaatttagaaataaaaatttcttccactcattcatttcac |
8189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 469 - 535
Target Start/End: Original strand, 29500350 - 29500416
Alignment:
| Q |
469 |
gattattctacatctcatttccacttattttaaaatatattactgatattacttccatgtttatttt |
535 |
Q |
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| T |
29500350 |
gattattctatatctcatttccatttatgtgaaaataaattactgacataacttccatgtttatttt |
29500416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 486 - 547
Target Start/End: Complemental strand, 24779252 - 24779190
Alignment:
| Q |
486 |
tttccacttattttaaaatatattactgatattacttccatgttta-ttttcgttatttattt |
547 |
Q |
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| T |
24779252 |
tttccatttattttaaaataaactattgaaattacttccatgtttatttttcgttatatattt |
24779190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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