View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19023_low_11 (Length: 275)
Name: NF19023_low_11
Description: NF19023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19023_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 44017031 - 44016769
Alignment:
| Q |
1 |
caagcacttctttctcttgcaacatcatcaccttctattctctcttcatggaacccttcaacatcaacaccatgttcatggaaaggcataacttgttcac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44017031 |
caagcacttctttctcttgcaacatcatcaccttctattctctcttcatggaacccttcaacatcaacaccatgttcatggaaaggcataacttgttcac |
44016932 |
T |
|
| Q |
101 |
cacaatctagagtgatttccctttctatccctgatactttcctcaacctcacttctttaccatctcaactatcctctttaacaatgcttcagcttcttaa |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44016931 |
cacaatctagagtgatttccctttctatccctgatactttcctcaacctcacttctttaccatctcaactatcctctttaacaatgcttcagcttcttaa |
44016832 |
T |
|
| Q |
201 |
tctctcttcaaccaatctctctggctctatcccaccttcttttggtcaactctcccatcttca |
263 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44016831 |
tctctcttcaaccaatctctctggctctatcccaccttcttttggtcaactctcccatcttca |
44016769 |
T |
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