View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19023_low_14 (Length: 245)
Name: NF19023_low_14
Description: NF19023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19023_low_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 38835680 - 38835906
Alignment:
| Q |
1 |
taatgaattgaagattcagaacatttaactactttagccnnnnnnnctcacctcctgacttttcaccaggtgattcaaagttatatgcagccaggcgttc |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38835680 |
taatgaattgaagatttagaacatttaactactttagccaaaaaaactcacctcccgacttttcaccaggtgattcaaagttatatgcagccaggcgttc |
38835779 |
T |
|
| Q |
101 |
ttgaatagatagaatatagctatcgtcatcagcttcctgatgatcggcatattatgaaaatgtaagcgcttatacatgattggaaggacaaaaatgtagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38835780 |
ttgaatagatagaatatagctatcgtcatcagcttcctgatgatcggcatattatgaaaatgtaagcgcttatacatgattggaaggacaaaaatgtagt |
38835879 |
T |
|
| Q |
201 |
acaggaataaggcaattggcatacctt |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
38835880 |
acaggaataaggcaattggcatacctt |
38835906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 144
Target Start/End: Original strand, 9870382 - 9870464
Alignment:
| Q |
56 |
tgacttttcaccaggtgattcaaagttatatgcagccaggcgttcttgaatagatagaatatagctatcgtcatcagcttcctgatgat |
144 |
Q |
| |
|
|||||||||||||| |||||| |||||||| |||| ||||||||||||| ||| |||| | |||||||||||||||||||||| |
|
|
| T |
9870382 |
tgacttttcaccagatgattctaagttatacacagctaggcgttcttgaagagagagaa------tttcgtcatcagcttcctgatgat |
9870464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University