View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19023_low_2 (Length: 571)
Name: NF19023_low_2
Description: NF19023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19023_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 140 - 546
Target Start/End: Complemental strand, 46727641 - 46727235
Alignment:
| Q |
140 |
ttcaattccaccagattttgcatgtaactaaacccaaagaattcatatatgaatgtaatgaaattcctatatccacccatgacgcatgtctgtgtgagtt |
239 |
Q |
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| T |
46727641 |
ttcaattccaccagattttgcatgtaactaaacccaaagaattcatatatgaatgtaatgaaattcctatatccacccatgacgcatgtctgtgtgagtt |
46727542 |
T |
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| Q |
240 |
agctagctgccacagatcatgacactttgtcgatcctttattccaaattttatttttggcaatgaacttgcttttatcctaacgggtgtgtttgatttgc |
339 |
Q |
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| T |
46727541 |
agctagctgccacagatcatgacactttgtcgatcctttattccaaattttatttttggcaatgaacttgcttttatcctaacgggtgtgtttgatttgc |
46727442 |
T |
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| Q |
340 |
tnnnnnnntaagggatggacaactgttattgtgccttgtttaatttagaaactggctataggactagacaaaacaagggacaagcgactgaacaaaaact |
439 |
Q |
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| T |
46727441 |
taaaaaaataagggatggacaactgttattgtgccttgtttaatttagaaactggctataggactagacaaaacaagggacaagcgactgaacaaaaact |
46727342 |
T |
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| Q |
440 |
agaagtttcaaacttaggttggtaatgcaaagggagatactgccattttcatttatcactataataagtttgaaaacatgtacatgtttggcaattggaa |
539 |
Q |
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| T |
46727341 |
agaagtttcaaacttaggttggtaatgcaaagggagatactgccattttcatttatcactataataagtttgaaaacacgcacatgtttggcaattggaa |
46727242 |
T |
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| Q |
540 |
ctccatc |
546 |
Q |
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| T |
46727241 |
ctccatc |
46727235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 46727699 - 46727641
Alignment:
| Q |
20 |
caatttgtgtcaaagctttgagaaatctgacaaatggacatgaatttcttctactgtat |
78 |
Q |
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| T |
46727699 |
caatttgtgtcaaagctttgagaaatctgacaaatggacatgaatttcttctagtgtat |
46727641 |
T |
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